PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29352_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21970.9 Da    PI: 4.5556
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29352_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.54.8e-151966148
                                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                kri n+ +r vtfskR++g+l KA  LS  ++ ++ v+i+s++g++++
  Cotton_A_29352_BGI-A2_v1.0 19 KRIPNQKKRWVTFSKRKKGLLSKAARLSSITGEDIGVVIISEQGRFHT 66
                                79********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-141170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.2171171IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-161281IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-121333IPR002100Transcription factor, MADS-box
CDDcd002661.71E-191387No hitNo description
PfamPF003194.4E-132066IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-123348IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-124869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDEARPGRRG ASRRRIELKR IPNQKKRWVT FSKRKKGLLS KAARLSSITG EDIGVVIISE  60
QGRFHTSDNA DAVIDRYLSI EARKDNNGDG RNDDAGTSNQ GIVEDDNNYD DDGLDDGATL  120
RLFPQEIGQD DDHNDDGRFG NGRVMDTQGL NLNQWDNVWK INDGEIKGEN CFIDLNKPPH  180
NDDDDGGGDD TMIHFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016737842.11e-129PREDICTED: pheromone receptor transcription factor-like
TrEMBLA0A1U8NFS01e-128A0A1U8NFS0_GOSHI; pheromone receptor transcription factor-like
STRINGGorai.009G356000.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1836949
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65060.24e-13MIKC_MADS family protein