PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29353_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 105aa MW: 11746.3 Da PI: 10.2596

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29353_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51	1.8e-16	7	50	7	50
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + ++ s+Rr ++KKA ELS+LC+a+va++++s++gk+ ++ Cotton_A_29353_BGI-A2_v1.0 7 RGTKIATSRRRCSLFKKAAELSTLCGARVAIVVISKKGKVSMFP 50 55567779********************************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-4	1	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.087	4	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.26E-14	10	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-14	11	48	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-8	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.8E-8	30	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MASKNLRGTK IATSRRRCSL FKKAAELSTL CGARVAIVVI SKKGKVSMFP DSDTVIHRYI 60 NRKNNFKTSY SSKEEESMNN EVAEESVDQS LSDQNPSLTL PANYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022717825.1	2e-26	MADS-box protein AGL72-like
TrEMBL	A0A2P5W457	1e-70	A0A2P5W457_GOSBA; Uncharacterized protein
STRING	Gorai.009G356100.1	9e-56	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22354	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	5e-14	AGAMOUS-like 62