PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29356_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 241aa    MW: 28205.3 Da    PI: 10.4763
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29356_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.91e-15142203365
                         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrd 65 
                                 pGfr hP  eelv +yL+++ve+k++++ + ik++diy+++ wdLp++ +++++e yfF+kr 
  Cotton_A_29356_BGI-A2_v1.0 142 PGFRLHPIYEELVGFYLRRRVENKPVKI-QLIKRMDIYRYDRWDLPRAESEGQSESYFFCKRG 203
                                 9***************************.89***************665667789*****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-14138204IPR003441NAC domain
PROSITE profilePS5100517.76140241IPR003441NAC domain
PfamPF023657.2E-6142203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MFRIQLTNLQ KFKDRERVGT TSKQKQKFTH TARSKSFARV ADDKEKLKDK RAEYEVIASS  60
DSSVNLNDID NRIITKILGP ERYDRVRFQG YFVNPTQYFR SSSQQYMPSR NQAQAEVQSP  120
IFVSFTATKK KRKMKVEDVP LPGFRLHPIY EELVGFYLRR RVENKPVKIQ LIKRMDIYRY  180
DRWDLPRAES EGQSESYFFC KRGSIGTALD RIGLPDRGFG KQLGLIELFI HMEVNTISAL  240
G
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5962084e-60JX596208.1 Gossypium hirsutum clone NBRI_GE32728 microsatellite sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-28NAC domain containing protein 42