PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29420_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

YABBY

Protein Properties

Length: 192aa MW: 21638.5 Da PI: 8.5838

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29420_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	166.9	1.5e-51	4	167	2	170
YABBY 2 dvfssseqvCyvqCnfCntila........vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelk 76 +++s++eq+Cy+ Cn Cn ila v+vP +slf++vtvrCG Ct+l svnla + q +a ++ ++ + Cotton_A_29420_BGI-A2_v1.0 4 SHNSAPEQLCYIPCNLCNIILAvfnsdpalVNVPCNSLFETVTVRCGQCTNLCSVNLAASFQSRAGKDV--------QVPNYT 78 68899**************73334444469***********************9999999885........333444 PP YABBY 77 veeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 ++e ++ +++ +++ ++++++++ ++e v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aakn Cotton_A_29420_BGI-A2_v1.0 79 SSEYRIDLGSSSRCKNKLPKRATTINTTTQER-----VVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKN 156 44444433333332222223333333333333.....469*************************************** PP YABBY 160 WahfPkihfgl 170 Wa fP+ihfgl Cotton_A_29420_BGI-A2_v1.0 157 WARFPHIHFGL 167 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.9E-59	8	167	IPR006780	YABBY protein
SuperFamily	SSF47095	1.57E-6	106	160	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MSSSHNSAPE QLCYIPCNLC NIILAVFNSD PALVNVPCNS LFETVTVRCG QCTNLCSVNL 60 AASFQSRAGK DVQVPNYTSS EYRIDLGSSS RCKNKLPKRA TTINTTTQER VVNRPPDKRH 120 RAPSLYNQFI KEEIQRIKLN NPDITHREAF STAAKNWARF PHIHFGLMLE TDNQPKLNDV 180 STNFHLEAMQ TI

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640876.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_017640878.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X3
Refseq	XP_017640879.1	1e-124	PREDICTED: axial regulator YABBY 5-like isoform X3
Swissprot	Q8GW46	6e-75	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0B0PIQ3	1e-123	A0A0B0PIQ3_GOSAR; Axial regulator YABBY 5-like protein
STRING	Gorai.002G054200.1	1e-123	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	3e-77	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]