PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29441_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 648aa    MW: 73933.9 Da    PI: 8.4835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29441_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-09463504240
                                 SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                                 ++WT+eE ell ++ +++++g   +W+ I++++g+gR+ +++
  Cotton_A_29441_BGI-A2_v1.0 463 KPWTKEEIELLRKGTQKYPKGtsrRWEVISEYIGTGRSVEEI 504
                                 69***********************************99876 PP
2Myb_DNA-binding27.28.9e-09591635345
                                 SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                                  W++  +  l++a k ++++   +W+++a  ++ g+t +qck ++ 
  Cotton_A_29441_BGI-A2_v1.0 591 VWSAVQERALIQALKTFPKEtsqRWERVATAVP-GKTVNQCKKKFA 635
                                 6********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465651.96E-2092175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.6E-2094199IPR001623DnaJ domain
SMARTSM002718.0E-1596171IPR001623DnaJ domain
CDDcd062571.06E-1297168IPR001623DnaJ domain
PROSITE profilePS5007618.34997179IPR001623DnaJ domain
PfamPF002261.6E-1697176IPR001623DnaJ domain
PRINTSPR006253.6E-7102120IPR001623DnaJ domain
PRINTSPR006253.6E-7120135IPR001623DnaJ domain
PRINTSPR006253.6E-7151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.606.1E-6457504IPR009057Homeodomain-like
PROSITE profilePS512937.076460515IPR017884SANT domain
SMARTSM007171.1E-7461514IPR001005SANT/Myb domain
SuperFamilySSF466894.86E-8463506IPR009057Homeodomain-like
PfamPF002492.2E-7463504IPR001005SANT/Myb domain
CDDcd001678.53E-6464504No hitNo description
PROSITE profilePS5129310.24587642IPR017884SANT domain
SMARTSM007173.8E-9588640IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-5589634IPR009057Homeodomain-like
SuperFamilySSF466892.69E-9590644IPR009057Homeodomain-like
PfamPF002492.2E-7591634IPR001005SANT/Myb domain
CDDcd001672.98E-6592638No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MAVRTSIQLI SYSQELVDGQ PLYVSSNCLP VKALKYEPAG HAFHNAALKL FGCEEDDTTE  60
VDDQKVGNDK EQAYMPSSDS YSNKGKKKSG ADGKQQDHYA LLGLSHLRYL ATEDQIRKSY  120
REAALRHHPD KLANLLLAEE TEAAKQAKKD EIENHFKSIQ EAYEILIDPV RRRIYDSTDE  180
FDDEIPTECA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STPLKDVDNF YNFWYSFKSW  240
REFPHADEYD LEQAESRDHK RWMERQNAKL SEKARKEEYA RIRALVDNAY KRDPRILRRK  300
EEEKAEKQRK KEAKVRAKQL QEEEAARAAE EERRRKEEED KRAAEAALQH KKNKEKEKKL  360
LRKERTRLRT LSAPVLLQHL HDLSEEDVES LCMTLGIEQL RSLCDKMDNK EALERAKLIQ  420
DARGYNSNTE GKKIDETNGS HLNGSVDSNG SILSSSSFEK KEKPWTKEEI ELLRKGTQKY  480
PKGTSRRWEV ISEYIGTGRS VEEILKATKT VLLQKPDATK AFDSFLEKRK PAATIASPLS  540
TREEVGVVSM PSRTENTTAK TSSPEDSGKT GSSPVDVVSG NGVSSSSEQD VWSAVQERAL  600
IQALKTFPKE TSQRWERVAT AVPGKTVNQC KKKFALLKEN FRSKKSTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-1918629613123Zuotin
5dje_B2e-1918629613123Zuotin
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017646049.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_017646050.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A2P5WNB90.0A0A2P5WNB9_GOSBA; Uncharacterized protein
STRINGGorai.010G212600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain