PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29569_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 699aa    MW: 76662.9 Da    PI: 5.7384
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29569_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS324.81.8e-993426982374
                        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                 +++L+++Ae +++gd  laq +Larl+++ sp g+p+ R+a+yf+eAL+           ++ ++s  s++n++ ++ a+k f
  Cotton_A_29569_BGI-A2_v1.0 342 IDQLIQAAELIETGDPVLAQGILARLNHQLSPVGKPFIRAAFYFKEALQLLFPL------NTSNTSVMSNYNMIFKIGAYKSF 418
                                 689*********************************************987766......666777777888*********** PP

                        GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLak 167
                                 se+sPi++f+++t+Nqa+le +eg++rvHiiDfd+++G+QW++L+q+L  R++g+ps++iT+++sp+s++  el  t e+L++
  Cotton_A_29569_BGI-A2_v1.0 419 SEISPIVQFANFTCNQALLEVFEGCNRVHIIDFDVGYGGQWASLMQELVLRNGGAPSMKITAFASPSSHDDIELGFTIENLKH 501
                                 *********************************************************************************** PP

                        GRAS 168 fAeelgvpfefnvlvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                 +A+e++++f+++++  ++l++   +  L++ ++Ea+aVnl +  ++ +      +s  + vL++vk+lsPk+vv  ++ +d++
  Cotton_A_29569_BGI-A2_v1.0 502 YASEINMDFDIEIMSLEALNSGsWPLPLHLGENEAIAVNLPIGSFSNY------PSILPLVLRFVKQLSPKIVVSLDRGCDRT 578
                                 *************8555555441355679999**********888877......455568*********************** PP

                        GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsek 332
                                 + +F +++++al+ ys l++sl+a    + ++  k+Er++l+++i+++v  ++++     e+   Wr+ + ++GF+p+++s++
  Cotton_A_29569_BGI-A2_v1.0 579 DVPFPHHIIHALQSYSGLLESLDAV-NMNLDALEKIERFFLQPSIEKIVLGRHRS----LERRPPWRSLFIQSGFSPLTFSNF 656
                                 **********************766.45669999****************99998....88889******************* PP

                        GRAS 333 aakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +++qa++l+++++ +g++ve+++ slvl+W++r+L+++SaWr
  Cotton_A_29569_BGI-A2_v1.0 657 TESQAECLIQRTPIRGFHVEKRQSSLVLCWQRRELIAASAWR 698
                                 *****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.013315678IPR005202Transcription factor GRAS
PfamPF035146.1E-97342698IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MKAMPLSFEE FQGKGALDFS SSTSSCSDSS LLLQHQHQQH EKEGKWQNKG GDCCYVGSEP  60
IDNNIKTRRK RSPSPSSTLS SSLGGGGSGG GASTDTTGVA ATTTVVSATT NTSQSLDVGK  120
CGLGMEDWES VLSGSPNQDQ SILRLIMGDI DDPSMGLNKI LQPPSGGGGG GGSENMEFNA  180
GFGVVDHGFG FDSITSSVSL INNVDPPISC SDFPVTSNPP SLLPPPSPCV FPQQQSQLQV  240
MDEKPQIFNP QMIINQNQAR FTQNPTMFLP LSYAQLQEHS LLSPPPPKRF NSGGPFSGSG  300
PELYLRRQQQ QQIQMLQQRP ITGKPKIVTD DLANQQLQQA IIDQLIQAAE LIETGDPVLA  360
QGILARLNHQ LSPVGKPFIR AAFYFKEALQ LLFPLNTSNT SVMSNYNMIF KIGAYKSFSE  420
ISPIVQFANF TCNQALLEVF EGCNRVHIID FDVGYGGQWA SLMQELVLRN GGAPSMKITA  480
FASPSSHDDI ELGFTIENLK HYASEINMDF DIEIMSLEAL NSGSWPLPLH LGENEAIAVN  540
LPIGSFSNYP SILPLVLRFV KQLSPKIVVS LDRGCDRTDV PFPHHIIHAL QSYSGLLESL  600
DAVNMNLDAL EKIERFFLQP SIEKIVLGRH RSLERRPPWR SLFIQSGFSP LTFSNFTESQ  660
AECLIQRTPI RGFHVEKRQS SLVLCWQRRE LIAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-323416984375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5274720.0HQ527472.1 Gossypium herbaceum clone NBRI_A_6925 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637200.10.0PREDICTED: scarecrow-like protein 6
SwissprotO813161e-170SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A2P5QKQ50.0A0A2P5QKQ5_GOSBA; Uncharacterized protein
STRINGGorai.008G106000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85742739
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-154GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]