PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29575_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 106aa MW: 11351.8 Da PI: 5.5485

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29575_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00054	28	50	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C + Fs+ L H r+H Cotton_A_29575_BGI-A2_v1.0 28 HECPVCFRIFSSGQALGGHKRSH 50 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.63E-6	25	53	No hit	No description
Pfam	PF13912	2.6E-10	27	50	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.037	28	50	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	30	50	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MKPYSPATEA IHEPPENVGT SIPEKKTHEC PVCFRIFSSG QALGGHKRSH VTGQVIATST 60 TKTAVTSSKK LGDSLIDLNL PAPMDDDDIS QIELSAVSDA EFVKPF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017636688.1	2e-72	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	A0A2P5Y1J9	4e-71	A0A2P5Y1J9_GOSBA; Uncharacterized protein
STRING	Gorai.008G106500.1	2e-70	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1465	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	9e-18	C2H2-like zinc finger protein