PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29580_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 417aa    MW: 46845.7 Da    PI: 8.3025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29580_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.44.5e-31117207186
                                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                 f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+
  Cotton_A_29580_BGI-A2_v1.0 117 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDI 199
                                 89***************************966778999********************************************* PP

                                 EEEEE-.S CS
                          B3  80 vvFkld.g 86 
                                 v F++  g
  Cotton_A_29580_BGI-A2_v1.0 200 VSFQRGaG 207
                                 ****6523 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-42109224IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-30114208IPR015300DNA-binding pseudobarrel domain
CDDcd100171.62E-27115204No hitNo description
PfamPF023622.5E-28117211IPR003340B3 DNA binding domain
SMARTSM010194.9E-21117219IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72117222IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDFGSSGREG LCEEEQMGKG KLPFTYSPSP SSSSSQHKSQ LPPLRNPGWE EQPWPIYDNR  60
HHRMTSDLLG YRCQPQQDIN EATTVTSEAD SRRVDSDSTL ELRTSESATD IEKEHMFDKV  120
VTPSDVGKLN RLVIPKQHAE KYFPLDSSTN EKGLLLNFED RNGKPWRFRY SYWNSSQSYV  180
MTKGWSRFVK DKKLDAGDIV SFQRGAGEMG KDRLFIDSKR RPDAPALVSF HPHQHYFSLG  240
RSIPWNPLLM RPPPTGRDRL YLSPVNPINR RNSYYGGYPT GINVVNPGDA VGSLFYLRSA  300
VGSGAPQMGM IQRQQQGGVV EPIVFDSVPV VQSKAAPKRM RLFGVNMECP IPESNECEML  360
TTSTLAHATM APQHPDQPPS SSQHPLQLRL YNGTPLPPTD FLNANKVKAS LSFDLDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-631122223114B3 domain-containing transcription factor NGA1
5os9_B1e-631122223114B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636354.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like isoform X1
TrEMBLA0A1U8HWW30.0A0A1U8HWW3_GOSHI; B3 domain-containing transcription factor NGA1-like isoform X1
STRINGGorai.004G128200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.16e-75B3 family protein