PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29686_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 248aa    MW: 26921.3 Da    PI: 7.7841
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29686_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00053155177123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C+ Cg  Fs+   L  H+r+H
  Cotton_A_29686_BGI-A2_v1.0 155 HECSLCGAEFSSGQALGGHMRRH 177
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.2E-1080105IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-781103No hitNo description
SMARTSM003550.4581103IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.18281108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-7150177No hitNo description
PfamPF139121.0E-12154178IPR007087Zinc finger, C2H2
SMARTSM003550.019155177IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785155177IPR007087Zinc finger, C2H2
PROSITE patternPS000280157177IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGSSPSTTAT TSSGAESGRN SDDWRGFGSP TTSVELAEST EEDEDMANCL ILLARGQTGK  60
LAPEPVSIAT TSKTITGTYV HQCKTCNRCF PSFQALGGHR ASHKKPKVAN IEENNKGLMF  120
MKEDVQQPFN NMNTTLSLQI TNKPTLCHIS KPKVHECSLC GAEFSSGQAL GGHMRRHRTI  180
PNAAAAAATT IVRPESDDKP KKPRTVLQLD LNLPAPEDDH QRETKFSFAS KQDKLVLFSA  240
SSLVDCHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205PKKPRTV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605618.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A1U8JIL90.0A0A1U8JIL9_GOSHI; zinc finger protein ZAT5-like
STRINGGorai.006G161200.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63472745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.16e-52C2H2 family protein