PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29789_BGI-A2_v1.0

Common Name

F383_17418

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 989aa MW: 108518 Da PI: 5.3526

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29789_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.6e-29	598	649	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Cotton_A_29789_BGI-A2_v1.0 598 AEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 649 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.859	581	669	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	601	649	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.89E-22	883	973	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-24	886	968	No hit	No description
PROSITE profile	PS51745	23.373	889	971	IPR000270	PB1 domain
SMART	SM00666	1.5E-22	889	971	IPR000270	PB1 domain
CDD	cd06407	1.08E-30	890	968	No hit	No description
Pfam	PF00564	2.9E-17	890	968	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
MELPFSSKEK GHGYWVPPGA QMEGGEQFDG TARNLVSEDP FSFSELMNFD SYAGRCNSPA 60 AIDQTFASFG LSSYPPLPYT SFDTLHITGP SSGTFAEAGD ALSGMDSSYN FADRMVYQQA 120 DAHFGNPLDS ADGELGGRQN NGGTRQSNSL VLANSLVSRS IKRSLDERML RALSLFKESS 180 GGGILAQVWV PIKHGDQYML TTSNQPYLLD QMLSGYREVS RTYAFPAELK PGSFPGLPGR 240 VFISRVPEWT SNVIHYSKVE YLRFAHAINH KVRGSIALPI FEPSEMSCCA VLELVTMKEK 300 HNFDSEIENV SIALQAVNLR TTAPPRLLPQ CLSRNQRAAL GDIADVLRAV CHAHRLPLAL 360 TWIPCNYTEE AADETTKLRV RDGDTDRDGK CVLCIEDTTC YVNDKGMQDF VHACIEHYLE 420 EGQGIAGKAL QSNHPFFSAD VKTYDINDYP LVHHARKFNL NAAVAIRLRS TYTGDDDYIL 480 EFFLPVTMKG SSEQQLLLNN LSGTMQRICR SLRTVSDVEI SGEGSNVEFQ RGTVPNFPLT 540 SMSRSSETVL SADSERNLHD RVPLNASNAT SDGKETDGPP EQAMTRPRRH VEKKRNTAEK 600 NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL 660 DSVQGVEGGL KFDPATGAFV AAGNVIQEAD TRKTLVFSNR NLPTRVPEPV NQEKSSAPLA 720 SCPDGENSVV KLEEDECSVG GNNRDAIRSV LIQSTLDSKS VGPDLRSFQA ASFGTATWTC 780 PENATTDSYV GGGQRWGFNE GNPKVEDSDC HFVSGSSSSL AAAADDEIDT RMEGDDGIVE 840 HNHQPISSSM TDSLNGSGSM LHRSSSSSQS FEDAEDTKPK TISVDSSSKI TVKATYKDDT 900 VRFKFKPSAG CFQLYEEVAK RFKIQIGTFQ LKYLDDEEEW VLLVSDSDLL ECLEILEYIG 960 SRSLKFQVCD IPCTMGSSGS SNCFLTGGS

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

MELPFSSKEK GHGYWVPPGA QMEGGEQFDG TARNLVSEDP FSFSELMNFD SYAGRCNSPA  60
AIDQTFASFG LSSYPPLPYT SFDTLHITGP SSGTFAEAGD ALSGMDSSYN FADRMVYQQA  120
DAHFGNPLDS ADGELGGRQN NGGTRQSNSL VLANSLVSRS IKRSLDERML RALSLFKESS  180
GGGILAQVWV PIKHGDQYML TTSNQPYLLD QMLSGYREVS RTYAFPAELK PGSFPGLPGR  240
VFISRVPEWT SNVIHYSKVE YLRFAHAINH KVRGSIALPI FEPSEMSCCA VLELVTMKEK  300
HNFDSEIENV SIALQAVNLR TTAPPRLLPQ CLSRNQRAAL GDIADVLRAV CHAHRLPLAL  360
TWIPCNYTEE AADETTKLRV RDGDTDRDGK CVLCIEDTTC YVNDKGMQDF VHACIEHYLE  420
EGQGIAGKAL QSNHPFFSAD VKTYDINDYP LVHHARKFNL NAAVAIRLRS TYTGDDDYIL  480
EFFLPVTMKG SSEQQLLLNN LSGTMQRICR SLRTVSDVEI SGEGSNVEFQ RGTVPNFPLT  540
SMSRSSETVL SADSERNLHD RVPLNASNAT SDGKETDGPP EQAMTRPRRH VEKKRNTAEK  600
NVSLSVLQQY FSGSLKDAAK SIGVCPTTLK RICRQHGISR WPSRKINKVN RSLRKIQTVL  660
DSVQGVEGGL KFDPATGAFV AAGNVIQEAD TRKTLVFSNR NLPTRVPEPV NQEKSSAPLA  720
SCPDGENSVV KLEEDECSVG GNNRDAIRSV LIQSTLDSKS VGPDLRSFQA ASFGTATWTC  780
PENATTDSYV GGGQRWGFNE GNPKVEDSDC HFVSGSSSSL AAAADDEIDT RMEGDDGIVE  840
HNHQPISSSM TDSLNGSGSM LHRSSSSSQS FEDAEDTKPK TISVDSSSKI TVKATYKDDT  900
VRFKFKPSAG CFQLYEEVAK RFKIQIGTFQ LKYLDDEEEW VLLVSDSDLL ECLEILEYIG  960
SRSLKFQVCD IPCTMGSSGS SNCFLTGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619681.1	0.0	PREDICTED: protein NLP8
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A0B0MJ28	0.0	A0A0B0MJ28_GOSAR; Protein NLP8
STRING	Gorai.005G126000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]