PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_29883_BGI-A2_v1.0

Common Name

F383_34980

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 476aa MW: 52372.5 Da PI: 6.1159

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_29883_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	122	144	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg s+++ ++ H t+ Cotton_A_29883_BGI-A2_v1.0 122 FECPICGASYRSEEEVSIHVETC 144 89*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd09212	6.65E-20	177	271	No hit	No description
SuperFamily	SSF143503	2.48E-17	188	251	IPR018997	PUB domain
Pfam	PF09409	1.8E-15	189	262	IPR018997	PUB domain
SMART	SM00580	1.7E-19	189	256	IPR018997	PUB domain
SuperFamily	SSF54236	1.11E-12	336	449	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	11.587	365	449	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	1.7E-8	365	447	No hit	No description
Pfam	PF00789	4.1E-5	366	416	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MSEMKDKLKG FMKKVNTQFS SSSSSSSGKF KGQGRVLGSS SSSGPVNPIL TRPSPTPNPA 60 PSSSSSNSKP VLPSKPPVSD QNKPSSNSNP EPNHKTGSGF DPYDSFITSS KVSKNGFTIN 120 VFECPICGAS YRSEEEVSIH VETCVNNTNS LDRKGTDDES GSNETALEES RGEVEVRVSS 180 FLSGKPAEGS IEVVLKLLRN IVKEPGNVKF RKLRMSNPKI REAIGEVAGG VELLEFVGFE 240 LKEEGGEMWA VMDVPKEEQI SVISKAIMLL EPGNMEKFKK SENISPAAPP EKEETVESKK 300 IDRKIRVFFS VPESVAAKIE LPDSFYNLSS EELKREAEMR KKKIADSQLL IPKSYKEKQA 360 KAARRKYRRT IIRIQFPDGV VLQGEFAPWE PTSALYEFVS SALKEPCLEF ELLDPVIVKR 420 RVIPSFPAAG EKGRTLEDED LVPSALIKFK PVETDSVVFT GLSNELLEIS EPLVTN

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MSEMKDKLKG FMKKVNTQFS SSSSSSSGKF KGQGRVLGSS SSSGPVNPIL TRPSPTPNPA  60
PSSSSSNSKP VLPSKPPVSD QNKPSSNSNP EPNHKTGSGF DPYDSFITSS KVSKNGFTIN  120
VFECPICGAS YRSEEEVSIH VETCVNNTNS LDRKGTDDES GSNETALEES RGEVEVRVSS  180
FLSGKPAEGS IEVVLKLLRN IVKEPGNVKF RKLRMSNPKI REAIGEVAGG VELLEFVGFE  240
LKEEGGEMWA VMDVPKEEQI SVISKAIMLL EPGNMEKFKK SENISPAAPP EKEETVESKK  300
IDRKIRVFFS VPESVAAKIE LPDSFYNLSS EELKREAEMR KKKIADSQLL IPKSYKEKQA  360
KAARRKYRRT IIRIQFPDGV VLQGEFAPWE PTSALYEFVS SALKEPCLEF ELLDPVIVKR  420
RVIPSFPAAG EKGRTLEDED LVPSALIKFK PVETDSVVFT GLSNELLEIS EPLVTN

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017612288.1	0.0	PREDICTED: plant UBX domain-containing protein 2-like
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A0B0N592	0.0	A0A0B0N592_GOSAR; UBX domain-containing protein 6
STRING	EOY01077	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]