PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29937_BGI-A2_v1.0
Common NameF383_28191
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 208aa    MW: 22468.5 Da    PI: 5.9204
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29937_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601314.8e-41641631100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaCk+lrr+C+++Cvlapyfp ++p+kf ++h++FGasn++k l++lpe++r da+ss+vyeA  r+rdPvyG++g i++l
  Cotton_A_29937_BGI-A2_v1.0  64 PCAACKILRRRCVDKCVLAPYFPPTEPSKFIIAHRVFGASNIIKSLQELPESQRADAVSSMVYEASSRIRDPVYGSAGAIFQL 146
                                 7********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 q+q++ l+a+la++++e
  Cotton_A_29937_BGI-A2_v1.0 147 QKQVSDLQAQLAKAQAE 163
                                 ************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.94463164IPR004883Lateral organ boundaries, LOB
PfamPF031956.7E-4164161IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MENNERGSIS PISIPTTFSY SPSSSPSSPL SQFSPSFPSP DSQSSSPPSP PRAAAASPQL  60
VLGPCAACKI LRRRCVDKCV LAPYFPPTEP SKFIIAHRVF GASNIIKSLQ ELPESQRADA  120
VSSMVYEASS RIRDPVYGSA GAIFQLQKQV SDLQAQLAKA QAEVVTMQCQ QANVLTLILE  180
MSQSKETIDT TCFLDDTCVV SPWEPLRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-416417111118LOB family transfactor Ramosa2.1
5ly0_B4e-416417111118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614597.11e-148PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR02e-67LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0B0MV521e-147A0A0B0MV52_GOSAR; LOB domain-containing 1-like protein
STRINGGorai.012G094200.11e-110(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-69LOB domain-containing protein 1