PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_29987_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 262aa    MW: 30190.9 Da    PI: 7.0835
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_29987_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-181764148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                rg W++eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl
  Cotton_A_29987_BGI-A2_v1.0 17 RGTWSAEEDSLLIHYIARHGEGHWNLLAKRAGLRRTGKSCRLRWLNYL 64
                                89********************************************97 PP
2Myb_DNA-binding48.61.9e-1571113246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Cotton_A_29987_BGI-A2_v1.0  71 GNLTPQEECLILQLHSKWGNR-WSKIAKYLP-GRTDNEIKNYWRT 113
                                 678******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0231264IPR017930Myb domain
SuperFamilySSF466891.39E-3015111IPR009057Homeodomain-like
SMARTSM007171.0E-151666IPR001005SANT/Myb domain
PfamPF002493.5E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-231871IPR009057Homeodomain-like
CDDcd001673.31E-121964No hitNo description
PROSITE patternPS0017503241IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129424.78465119IPR017930Myb domain
SMARTSM007172.2E-1569117IPR001005SANT/Myb domain
PfamPF002491.6E-1471113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-2372117IPR009057Homeodomain-like
CDDcd001672.27E-1274113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MLSYTNSSKG DAEQLRRGTW SAEEDSLLIH YIARHGEGHW NLLAKRAGLR RTGKSCRLRW  60
LNYLKPDVKH GNLTPQEECL ILQLHSKWGN RWSKIAKYLP GRTDNEIKNY WRTRVHKQAR  120
HLKIDANSTP FQHVIRCCNW MPRLLPKMES LNQTSQHDQE LMTMEQVPVQ EQISGSTDIM  180
STISQVAESQ TSPFSIISSN DDYTLAKYCY HDDNIDKNGC YYNLASTSAF EDLPYLDGDG  240
HKQDYTCVND GFADGLWSMG EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24151195108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638697.10.0PREDICTED: transcription factor MYB24-like
SwissprotQ9C9G74e-69MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2P5WGZ70.0A0A2P5WGZ7_GOSBA; Uncharacterized protein
STRINGGorai.001G075000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2236045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-71myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]