PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30002_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 595aa    MW: 65458.4 Da    PI: 6.9653
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30002_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.7e-06259280426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                 ++C++f++ G Ck Gd C +aHg
  Cotton_A_30002_BGI-A2_v1.0 259 APCPDFRK-GSCKQGDLCEYAHG 280
                                 59******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.9E-1149129IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.73E-1456138IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-1560141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.7366082IPR002110Ankyrin repeat
SMARTSM002488.1E-46090IPR002110Ankyrin repeat
PROSITE profilePS5029713.73560130IPR020683Ankyrin repeat-containing domain
CDDcd002044.43E-1462135No hitNo description
SMARTSM002480.004795127IPR002110Ankyrin repeat
PROSITE profilePS500889.56495130IPR002110Ankyrin repeat
SMARTSM003567.8E-5255281IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-4259280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.4E-5259281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.446260282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4287318IPR000571Zinc finger, CCCH-type
SMARTSM0035626290313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MECLTGAVGN NCSFSVLLEF AADNDVEGFQ RYMIASDVSL VGEVGLWYGC RKSSKQMVVE  60
QRTPLMIAAR YGSVDVVKLI LSLSEVDVNL SCGPDKRTAL HCAASGGSIG AVEVVKLLLL  120
AAADPCVTDA YGCRPSNVIV APWNMPQIKV ALEELLNNHD PVCLEKLHDS GSSDVKITAV  180
TCKTTDNIVS SAQEKEYPVD PSFPDINSSI YSTDEFRMFS FKIRPCSRAY SHDWTECPFV  240
HPGENARRRD PRKFHYSCAP CPDFRKGSCK QGDLCEYAHG VFESWLHPAQ YRTRICKDGT  300
TCQRRVCFFA HRPEELRPLY LSSGLGIQSP QSAASSVITM DKMGVLNLLS GSPSALTAIS  360
VSPFSPAMSP SANVISQAPT GWPQHVPTLH LSGSNLQGSR LRSSLNAKDM SAMELNMSRD  420
FEVHQRRYLS NLSCFSQPHL GQRISTWNVE PLSPLNSLLS ASTNLEKQQQ SLHNLSTQEL  480
GYKLSNDLES KGVTGSLLNS WPKRETPNCK VDWPIQEDEF SQFHKSCSIL HHGMEPAVSL  540
VQSMVKESPS VPTTLATSSR TLPVEGSNSN FRGKLGDHEI FLALCKQLQL DKIMA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6151591e-49JX615159.1 Gossypium hirsutum clone NBRI_GE59007 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016743791.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X2
SwissprotQ9LXV41e-179C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A1U8NXV20.0A0A1U8NXV2_GOSHI; zinc finger CCCH domain-containing protein 56-like isoform X2
STRINGGorai.001G138300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2236145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.11e-167CCCH-type zinc finger protein with ARM repeat domain