PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30015_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Trihelix

Protein Properties

Length: 412aa MW: 46879.6 Da PI: 6.0987

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30015_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.4	6.6e-22	111	204	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 +W+++ v++Li++++ ++++ + + +kk++W+ vsk m ++g+++sp+qC++k+++lnkrykk++++ +++ +++ Cotton_A_30015_BGI-A2_v1.0 111 KWKDNVVRLLIAVVSCVGDEEGVEGlkrksrilQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKKLNDILGRGtSCR 193 7************555544432112334566********************************************6699 PP trihelix 75 ssstcpyfdql 85 ++++ ++ d++ Cotton_A_30015_BGI-A2_v1.0 194 VVENPSLMDSM 204 99999999888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.9E-19	109	231	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MDDSGLECGF LSGPNGGLFD LESSIQREQQ PQNHVVMMTG LGNEHRSTGL TEAKGSSQKG 60 FPMNFGKGKG VSPVIAITDG SMSEEDEPSY NEDGNGEKSE GKNGWPWKRM KWKDNVVRLL 120 IAVVSCVGDE EGVEGLKRKS RILQKKGKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK 180 KLNDILGRGT SCRVVENPSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN 240 CQDLDLQGCI PSERCLKDNN GSHEEEVDSE DDDDNDDDDD DNDDDYAVCK EERMGEVKER 300 KKASAECGGH DGFKFQEGTR SSMVGKDRIK RQMVQLQEER VKLQTDAFEL EKQRFKWVQY 360 CSKKDRELER LRLEKERRRL ENKQSILQLR RKVVEVGSLG IDRQSQIDMC SH

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MDDSGLECGF LSGPNGGLFD LESSIQREQQ PQNHVVMMTG LGNEHRSTGL TEAKGSSQKG  60
FPMNFGKGKG VSPVIAITDG SMSEEDEPSY NEDGNGEKSE GKNGWPWKRM KWKDNVVRLL  120
IAVVSCVGDE EGVEGLKRKS RILQKKGKWK TVSKIMISKG CHVSPQQCED KFNDLNKRYK  180
KLNDILGRGT SCRVVENPSL MDSMPHLSQK AKDDVKKILN SKHLFYQEMC AYHNGQSIPN  240
CQDLDLQGCI PSERCLKDNN GSHEEEVDSE DDDDNDDDDD DNDDDYAVCK EERMGEVKER  300
KKASAECGGH DGFKFQEGTR SSMVGKDRIK RQMVQLQEER VKLQTDAFEL EKQRFKWVQY  360
CSKKDRELER LRLEKERRRL ENKQSILQLR RKVVEVGSLG IDRQSQIDMC SH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017626548.1	0.0	PREDICTED: uncharacterized protein LOC108469929
TrEMBL	A0A0D2LYM0	0.0	A0A0D2LYM0_GOSRA; Uncharacterized protein
STRING	Gorai.001G139700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16739	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	3e-71	sequence-specific DNA binding transcription factors