PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_30224_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

VOZ

Protein Properties

Length: 695aa MW: 77889.3 Da PI: 7.0064

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_30224_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	438.3	9.8e-135	444	660	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecega 83 pppsaf+gpkcalwdctrpaqgs+w+qdycssfhatlalne++pgt+p+lrp+gi+lkd+ll++a++ak+qgk+vgip+cega Cotton_A_30224_BGI-A2_v1.0 444 PPPSAFMGPKCALWDCTRPAQGSDWFQDYCSSFHATLALNEDPPGTNPILRPGGISLKDNLLLDAVRAKAQGKNVGIPQCEGA 526 89******************************************************************************* PP VOZ 84 atakspwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfe 166 at+kspwna+elfdlsllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkef+g+krsyymdpqps+++e Cotton_A_30224_BGI-A2_v1.0 527 ATMKSPWNATELFDLSLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFAGQKRSYYMDPQPSGKYE 609 ******************************************************************************* PP VOZ 167 whlyeyeineldalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 whl+eyei+ +da+alyrlelkl+++kks+k+kv kdsladlqkk+grlta Cotton_A_30224_BGI-A2_v1.0 610 WHLFEYEIYGCDAFALYRLELKLANQKKSPKAKVPKDSLADLQKKMGRLTA 660 ***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07047	5.8E-42	3	125	IPR010754	Optic atrophy 3-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0004180	Molecular Function	carboxypeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 695 aa Download sequence Send to blast
MMLPVLKLGT LALKTACKPI ANRLKKEAGL HPRFRQLIIN FAQANHRFTT TMQRRIYGHA 60 TDVAIRPLNE EKAVQAAADL LGELFVFTVA GAAIIFEVQR SSRSEARKEE QRKQELEAMK 120 QKDEDVAREV ELIKLKIEEL EQLARGRGLA GLFNSRHAHD AEVSKEVFGR NVHRGQKTRV 180 LNTETRRSFS YLSRFPLCLS GDCAGPSLLL PPFPIACNIF LFSSISSLFF LGIFFPFPFF 240 FSEAMQNNSS KNKCTSASHQ QMVDNAKNRL NFLQEQFTDL QAARKEGRAG DVAVLEEQVY 300 QNLREWKAEL CTPSPASSLL GSLGSFSDDI NRLLQLYEEE DDATSPLKES AVLKPEIDDQ 360 SLNPSSLPVI PEDYFVTHEP QEQSFQGFDL CKVSTSANAD INYQLDYHPF DLQQDFDHGH 420 LLDANGTEDY VKDANSNMLP NISPPPSAFM GPKCALWDCT RPAQGSDWFQ DYCSSFHATL 480 ALNEDPPGTN PILRPGGISL KDNLLLDAVR AKAQGKNVGI PQCEGAATMK SPWNATELFD 540 LSLLEGEIIR EWLFFDKPRR AFESGNRKQR SLPDYSGRGW HESRKQVMKE FAGQKRSYYM 600 DPQPSGKYEW HLFEYEIYGC DAFALYRLEL KLANQKKSPK AKVPKDSLAD LQKKMGRLTA 660 EVPGDDKPPG KGKTKANKKA ATAAAAVANV NSAQD

Sequence ? help Back to Top

Protein Sequence Length: 695 aa Download sequence Send to blast

MMLPVLKLGT LALKTACKPI ANRLKKEAGL HPRFRQLIIN FAQANHRFTT TMQRRIYGHA  60
TDVAIRPLNE EKAVQAAADL LGELFVFTVA GAAIIFEVQR SSRSEARKEE QRKQELEAMK  120
QKDEDVAREV ELIKLKIEEL EQLARGRGLA GLFNSRHAHD AEVSKEVFGR NVHRGQKTRV  180
LNTETRRSFS YLSRFPLCLS GDCAGPSLLL PPFPIACNIF LFSSISSLFF LGIFFPFPFF  240
FSEAMQNNSS KNKCTSASHQ QMVDNAKNRL NFLQEQFTDL QAARKEGRAG DVAVLEEQVY  300
QNLREWKAEL CTPSPASSLL GSLGSFSDDI NRLLQLYEEE DDATSPLKES AVLKPEIDDQ  360
SLNPSSLPVI PEDYFVTHEP QEQSFQGFDL CKVSTSANAD INYQLDYHPF DLQQDFDHGH  420
LLDANGTEDY VKDANSNMLP NISPPPSAFM GPKCALWDCT RPAQGSDWFQ DYCSSFHATL  480
ALNEDPPGTN PILRPGGISL KDNLLLDAVR AKAQGKNVGI PQCEGAATMK SPWNATELFD  540
LSLLEGEIIR EWLFFDKPRR AFESGNRKQR SLPDYSGRGW HESRKQVMKE FAGQKRSYYM  600
DPQPSGKYEW HLFEYEIYGC DAFALYRLEL KLANQKKSPK AKVPKDSLAD LQKKMGRLTA  660
EVPGDDKPPG KGKTKANKKA ATAAAAVANV NSAQD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC166092	1e-34	AC166092.4 Glycine max cultivar Williams 82 clone gmw1-93l19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016677761.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_016677762.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_016677764.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_017616322.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_017616323.1	0.0	PREDICTED: transcription factor VOZ1-like
Refseq	XP_017616324.1	0.0	PREDICTED: transcription factor VOZ1-like
Swissprot	Q9SGQ0	1e-174	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0B0MP39	0.0	A0A0B0MP39_GOSAR; Serine carboxypeptidase-like 16
TrEMBL	A0A1U8IHZ8	0.0	A0A1U8IHZ8_GOSHI; transcription factor VOZ1-like
STRING	Gorai.005G198500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6667	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-167	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]