PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30227_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 428aa    MW: 47469.1 Da    PI: 8.4766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30227_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-057294123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                y C+ C+k F r  nL+ H r H
  Cotton_A_30227_BGI-A2_v1.0 72 YICEVCHKGFQRDQNLQLHRRGH 94
                                89*******************88 PP
2zf-C2H213.30.00024148170123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 +kC +C+k++  +s+ k H + +
  Cotton_A_30227_BGI-A2_v1.0 148 WKCDKCSKRYAVQSDWKAHAKIC 170
                                 58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.13E-57194No hitNo description
Gene3DG3DSA:3.30.160.602.1E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0387294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.7417294IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355240113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-5143168No hitNo description
SMARTSM00355140148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSNFVQDFEE DEHHSTVISQ SSNESPNPIE HPITTSSKKK RNLPGNPGKH AFYPDAEVVA  60
LSPRTLMATN RYICEVCHKG FQRDQNLQLH RRGHNLPWKL KQRINTEVKK RVYVCPEPNC  120
VHHHPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKRYAVQ SDWKAHAKIC GTREYRCDCS  180
TIFSRKDSFV THRAFCDALT EENYKVNRNH GAIGGSILQK QADETMSISD NTKMNLSIGN  240
ESMDSSQRLL SLKSTGIMNT SSNLDQIFNP TTSLASTLAM GSAYTSATAL LQKAAQMGAK  300
ISDNTIAPIL LRGFTGYSTS NMNSSDSVHD GSNGAGTNGL YVGEETSHNP LAPTALFDSH  360
FLQAENGKAA NLLGQVYMEG GQKLTVDFLG VEPTGHQNVD NERNYDGNIM NLGYSNAQEG  420
LKNLRANW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33144207366Zinc finger protein JACKDAW
5b3h_F2e-33144207366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5826931e-142JX582693.1 Gossypium hirsutum clone NBRI_GE15573 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016676346.10.0PREDICTED: protein indeterminate-domain 12-like
TrEMBLA0A2P5WYC10.0A0A2P5WYC1_GOSBA; Uncharacterized protein
STRINGGorai.005G198100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1801789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-107indeterminate(ID)-domain 2