PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30237_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 262aa    MW: 29959.1 Da    PI: 5.1904
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30237_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.6e-151461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd +l  +++++G  +W+  +++ g+ R++k+c++rw +yl
  Cotton_A_30237_BGI-A2_v1.0 14 KGAWSPEEDHKLRSYIQKFGLWNWRELPKYAGLERCGKSCRLRWMNYL 61
                                79******************99************************97 PP
2Myb_DNA-binding543.7e-1768110246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g+ T+eEd l+ ++++++G++ W+ Ia++++ gRt++++k++w++
  Cotton_A_30237_BGI-A2_v1.0  68 GNYTEEEDALIMKLHQEYGNR-WSMIAARLP-GRTDNEIKNHWHT 110
                                 789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.919961IPR017930Myb domain
SuperFamilySSF466897.19E-3111108IPR009057Homeodomain-like
SMARTSM007174.9E-101363IPR001005SANT/Myb domain
PfamPF002497.9E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231568IPR009057Homeodomain-like
CDDcd001671.16E-81661No hitNo description
PROSITE profilePS5129426.91762116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.0E-1568110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2669114IPR009057Homeodomain-like
CDDcd001679.09E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVRAPFYDKN GMKKGAWSPE EDHKLRSYIQ KFGLWNWREL PKYAGLERCG KSCRLRWMNY  60
LRPDVKHGNY TEEEDALIMK LHQEYGNRWS MIAARLPGRT DNEIKNHWHT RLKTRAKRNQ  120
ISSTDSQSES AHSWEGEGES MVIDTPPNMI LESSRLSPTT SSTTEFSSFS PPPIDSGYTS  180
NLNLSGGAVE PPSSSSTEIY EDQRGGGDFW SEPFVADNVY NQDGYPSSSL GRGGFDMPLP  240
YDHFYDDDSP DLVLYQMMQG WV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27121165108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5787163e-61JX578716.1 Gossypium hirsutum clone NBRI_GE10796 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636772.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U8MM240.0A0A1U8MM24_GOSHI; myb-related protein Myb4-like
STRINGGorai.008G151100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17768510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-54myb domain protein 63