PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30428_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 246aa    MW: 28770.5 Da    PI: 4.7933
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30428_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-14956148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W+ +Ed++l+ +++++G  +W+  ++  g+ R++k+c++rw +yl
  Cotton_A_30428_BGI-A2_v1.0  9 KGTWSHDEDQKLIAYIRKYGIWNWNEMPKFAGLQRSGKSCRLRWMNYL 56
                                799*****************99************************97 PP
2Myb_DNA-binding49.31.1e-1562105146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+++ eE+e ++++ k lG++ W++Ia++++  Rt++++k++w++
  Cotton_A_30428_BGI-A2_v1.0  62 RGNFSREEEETIIHLQKTLGNR-WSAIAARLP-QRTDNDIKNYWNT 105
                                 89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.757456IPR017930Myb domain
SuperFamilySSF466894.87E-287103IPR009057Homeodomain-like
SMARTSM007174.7E-11858IPR001005SANT/Myb domain
PfamPF002496.1E-13956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-211063IPR009057Homeodomain-like
CDDcd001672.43E-91156No hitNo description
PROSITE profilePS5129423.92257111IPR017930Myb domain
SMARTSM007172.5E-1461109IPR001005SANT/Myb domain
PfamPF002493.3E-1462105IPR001005SANT/Myb domain
CDDcd001679.04E-1064107No hitNo description
Gene3DG3DSA:1.10.10.609.5E-2564111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVRQPYLKKG TWSHDEDQKL IAYIRKYGIW NWNEMPKFAG LQRSGKSCRL RWMNYLRPNI  60
RRGNFSREEE ETIIHLQKTL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VIVEKKNSSS  120
ATTETKSSME ENSSDADSSM MVDILLDYQI PTMDSFPELA ADTTISLSDC DISVAVDDHY  180
SMAMDNNLVS SENYWEIENL WGQLLTMEGL DCEVMSPNSQ LWLHEPIYVC DSYYDPVVDL  240
WINPFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2751113108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5895711e-63JX589571.1 Gossypium hirsutum clone NBRI_GE24298 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675463.10.0PREDICTED: transcription factor MYB23-like
TrEMBLA0A1U8IGH81e-180A0A1U8IGH8_GOSHI; transcription factor MYB23-like
STRINGGorai.013G143200.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-50MYB-like 102