PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30431_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 242aa    MW: 28009.4 Da    PI: 6.1381
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30431_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.5e-12956148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W+ +Ed++l+ ++ ++G  +W+  +++ g+ R++k+ ++rw +yl
  Cotton_A_30431_BGI-A2_v1.0  9 KGTWSRDEDQKLIAYIVRYGIWNWNEMPKHAGLQRSGKSSRLRWMNYL 56
                                799*****************99************************97 PP
2Myb_DNA-binding513.2e-1662105146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg++T eE+e ++++ k lG++ W++Ia++++  Rt++++k++w++
  Cotton_A_30431_BGI-A2_v1.0  62 RGNFTREEEETIIRLQKILGNR-WSAIAARLP-QRTDNDIKNYWNT 105
                                 89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.511456IPR017877Myb-like domain
SuperFamilySSF466892.18E-257103IPR009057Homeodomain-like
SMARTSM007172.5E-8858IPR001005SANT/Myb domain
PfamPF002494.9E-10956IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-191063IPR009057Homeodomain-like
CDDcd001675.37E-71156No hitNo description
PROSITE profilePS5129424.71357111IPR017930Myb domain
SMARTSM007176.4E-1561109IPR001005SANT/Myb domain
PfamPF002491.7E-1462105IPR001005SANT/Myb domain
CDDcd001671.34E-1064107No hitNo description
Gene3DG3DSA:1.10.10.604.4E-2564111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRQPYLKKG TWSRDEDQKL IAYIVRYGIW NWNEMPKHAG LQRSGKSSRL RWMNYLRPNI  60
RRGNFTREEE ETIIRLQKIL GNRWSAIAAR LPQRTDNDIK NYWNTRLKKR VISENKNSTA  120
ATTSTTETNS SMVENSSDTD SSLMLTNILL DSPVSTIDDL LEPPAYSCFS PSGSNLVAVD  180
DKYSMGTDNN LVSCWETQSY LEQPQMIEGL DWEAVLPNSE LSHSHHQQNY VPLDDFWFNP  240
LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2751113108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617607.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A1U8IBH51e-176A0A1U8IBH5_GOSHI; trichome differentiation protein GL1-like
STRINGGorai.013G143000.11e-168(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17382411
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.13e-48MYB-like 102