PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_30489_BGI-A2_v1.0
Common NameF383_05075
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 436aa    MW: 47495.9 Da    PI: 8.043
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_30489_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-124873126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                                ++++ C++++rtG C yG++C+F+H+
  Cotton_A_30489_BGI-A2_v1.0 48 PGEPDCSYYLRTGSCGYGSNCRFNHP 73
                                5789*********************8 PP
2zf-CCCH36.86.4e-1292116327
                                 S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                 ++ C +f++tGtCkyG++Ck++H++
  Cotton_A_30489_BGI-A2_v1.0  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                                 789********************96 PP
3zf-CCCH38.32.2e-12138161427
                                 ---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 + C++f+rtG Ck+G  CkF+H++
  Cotton_A_30489_BGI-A2_v1.0 138 KSCPYFMRTGSCKFGVACKFHHPQ 161
                                 66********************97 PP
4zf-CCCH39.69e-13277302227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++Cr+++ tGtCkyG+ Ck++H++
  Cotton_A_30489_BGI-A2_v1.0 277 DQPECRYYMNTGTCKYGSDCKYHHPK 302
                                 689*********************96 PP
5zf-CCCH26.21.3e-08322347126
                                 --S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                 ++++ C+ +  +G Ck+G++C+F H+
  Cotton_A_30489_BGI-A2_v1.0 322 PGQPVCSSYTMYGLCKHGPTCRFDHP 347
                                 5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.9484775IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-64774IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-55376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71889117IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446134162IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-5139160IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6275302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549275303IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-10277302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-7278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6281302IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5320347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99321349IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5321348IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5323347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MPDNRQIQNN VVSNQSADSI EEAILRLKIN DNNQEVGVSK SVSYPDRPGE PDCSYYLRTG  60
SCGYGSNCRF NHPAYDARGG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNTLG LPMRQDEKSC PYFMRTGSCK FGVACKFHHP QPASAGTGLP VNGPVGSSVF  180
PPTGVPYAGG LPAWSLPRAP FVSGPHLQTQ SYMPVVVSPS QNIIPGNGWS TYMGPASSAG  240
ILGSNYAYNS MNPAESGSSG QMLLSSAPAS NFPERPDQPE CRYYMNTGTC KYGSDCKYHH  300
PKERISISAM SSVGPVGLPS RPGQPVCSSY TMYGLCKHGP TCRFDHPYMG YPYNYALSYP  360
LSMFDTSLLT YQRMTPPPNL SEAPLPSRVP DWARNTDPAS KKHQNLETKS SDDSSEQVVS  420
PPHSLQSSSK TSHDQN
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623430.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD91e-129C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0B0N1E90.0A0A0B0N1E9_GOSAR; Uncharacterized protein
STRINGGorai.001G097100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-131C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]