PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31206_BGI-A2_v1.0

Common Name

F383_25556

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 350aa MW: 39161.5 Da PI: 8.5703

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31206_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	131.3	3.4e-41	120	197	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Cotton_A_31206_BGI-A2_v1.0 120 RCQVEGCNVTLVNAKDYHRRHKVCETHSKAPKVVVLGLEQRFCQQCSRFHLVSEFDDSKRSCRRRLAGHNERRRKTSQ 197 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-35	114	182	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.641	118	195	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.55E-39	119	199	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.2E-32	121	194	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MEHDDMFMGN RSQTGNKYNP NNATTNSFNF ETTLTESHAL NHPHQQQQRY SLYAGDGSSR 60 IHQSADPHLV CLKLGKRHYF EGSTDLNNNR HSAGIGKKGK PYYDNLSGEG GGPSSSTGPR 120 CQVEGCNVTL VNAKDYHRRH KVCETHSKAP KVVVLGLEQR FCQQCSRFHL VSEFDDSKRS 180 CRRRLAGHNE RRRKTSQDSA TRNFARDNKP MTGSFPYVSS PTGRALSLLS SKVDSWISPS 240 NLSTRSSAAL RELIVENRAA VLARQLVLER DWHYIGEPQP AGSNPILVQH HSMLDPHGWD 300 FPFPETGGQV TLDLMQASNT AFGMLSVRGK TKEEEEECSE LWHSLQGTHG

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MEHDDMFMGN RSQTGNKYNP NNATTNSFNF ETTLTESHAL NHPHQQQQRY SLYAGDGSSR  60
IHQSADPHLV CLKLGKRHYF EGSTDLNNNR HSAGIGKKGK PYYDNLSGEG GGPSSSTGPR  120
CQVEGCNVTL VNAKDYHRRH KVCETHSKAP KVVVLGLEQR FCQQCSRFHL VSEFDDSKRS  180
CRRRLAGHNE RRRKTSQDSA TRNFARDNKP MTGSFPYVSS PTGRALSLLS SKVDSWISPS  240
NLSTRSSAAL RELIVENRAA VLARQLVLER DWHYIGEPQP AGSNPILVQH HSMLDPHGWD  300
FPFPETGGQV TLDLMQASNT AFGMLSVRGK TKEEEEECSE LWHSLQGTHG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-32	112	194	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ622318	0.0	KJ622318.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL10) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017605493.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	4e-58	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	4e-58	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A0B0P0A8	0.0	A0A0B0P0A8_GOSAR; Squamosa promoter-binding-like protein 7
STRING	Gorai.008G107300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15613	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	2e-39	squamosa promoter binding protein-like 10

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]