PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31232_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family G2-like
Protein Properties Length: 123aa    MW: 13898.2 Da    PI: 5.7252
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31232_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.49.7e-1197120225
                     G2-like   2 prlrWtpeLHerFveaveqLGGse 25 
                                 prlrWtp+LH +Fv+ ve+LGG+ 
  Cotton_A_31232_BGI-A2_v1.0  97 PRLRWTPDLHLSFVHSVERLGGQA 120
                                 8*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-893120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MIEGMVEKHD EEKRVDNEQA ENISAMSFPS QKCSSLDLNE EASSKEDYDY NIIGNGKQGD  60
EIEKTSEGNS SNNNNNIVGE KGKGRRRVRQ YVRSKLPRLR WTPDLHLSFV HSVERLGGQA  120
SNS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5964077e-42JX596407.1 Gossypium hirsutum clone NBRI_GE32984 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016754151.13e-82PREDICTED: uncharacterized protein LOC107962325
TrEMBLA0A2P5XZ292e-83A0A2P5XZ29_GOSBA; Uncharacterized protein
STRINGGorai.010G159700.13e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-13G2-like family protein