PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31263_BGI-A2_v1.0
Common NameF383_15968
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 288aa    MW: 31984.3 Da    PI: 7.1652
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31263_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.86.9e-31108166259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver ++dp+++++tY+ eHnh+
  Cotton_A_31263_BGI-A2_v1.0 108 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERHRSDPNMFIVTYTAEHNHP 166
                                 79*************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081134.578102168IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-30103168IPR003657WRKY domain
SuperFamilySSF1182901.57E-26104168IPR003657WRKY domain
SMARTSM007742.1E-37107167IPR003657WRKY domain
PfamPF031068.0E-26109166IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MADLYPQSRF SSFGSQEEPF QGQFSCFPNQ FEAKNAMEEL HELYKPFFPK SQPQTKQQQE  60
HQQVKPKLSQ VGSVTTTSSS TSTNNSRSKR RKNQLKRVCH VPPEGLSSDV WAWRKYGQKP  120
IKGSPYPRGY YRCSSSKGCL ARKQVERHRS DPNMFIVTYT AEHNHPAPTH RNSLAGSTRQ  180
KPFTPQTVIA GDSVKPSSSK PADSLSPTAS VDEGVVVQST KVDSREDLVE DEGEDEFGMS  240
DTAVSDDFFE GLEGLAEIVT RNCFPDNFPA SFDFPWTANN AATAAGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-2292169280Disease resistance protein RRS1
5w3x_D3e-2292169280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8258710.0KJ825871.1 Gossypium hirsutum WRKY protein 29 (WRKY29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623896.10.0PREDICTED: WRKY transcription factor 22-like
SwissprotO046094e-83WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A0B0NF180.0A0A0B0NF18_GOSAR; WRKY transcription factor 22-like protein
STRINGGorai.004G160100.11e-177(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78102741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-70WRKY family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]