PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31292_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 357aa    MW: 41443.7 Da    PI: 4.8677
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31292_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.31.5e-16148234286
                    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                                 Wt+ e+ +L++a  ++  + +r++l++  W+ev++k++e  ++er+ +qC+++++ l+k+ykk+k++  +  ts+s s++++f
  Cotton_A_31292_BGI-A2_v1.0 148 WTEGETFVLLDAWGDRFLQRKRKSLRAEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKAMVAETgTSTSNSKWVFF 230
                                 *************************************762678***********************9888779********** PP

                    trihelix  83 dqle 86 
                                 ++++
  Cotton_A_31292_BGI-A2_v1.0 231 KKMD 234
                                 ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-4110118IPR009057Homeodomain-like
PfamPF138378.2E-23147236No hitNo description
PROSITE profilePS500906.121148205IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-4173212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDEIEDVRYH SNPYGDNQQQ GYRSSSSGKL PVRDVSCSRL NGNQYVDGNE DEEEDDEDLS  60
EEDANHCKVN GDQYVRNYND GNDNKLYDDD EGSNQKNDDV DSRRHPKKRK LKDLVSSYEF  120
VRRVPAPEVA STSVPKPSCG GRNPLTDWTE GETFVLLDAW GDRFLQRKRK SLRAEEWQEV  180
AEKVSEVSKI ERTDTQCRNR LDTLKKKYKK EKAMVAETGT STSNSKWVFF KKMDMLMSSS  240
PQQGVIRKAI SDEIRDSPTS SESSDSEEDV SEGLPPKKRR LERQCDDDSW FKLLADSIRK  300
FSNVYEKIEN SKRVQMLELE NMRMEFHREL EMQKRQILKK LQAEIVKMQE EDNASSD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170QRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017608122.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1U8HZX10.0A0A1U8HZX1_GOSHI; trihelix transcription factor ASIL2-like
STRINGGorai.006G098600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2495234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-45Trihelix family protein