PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31311_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 360aa    MW: 40301.1 Da    PI: 6.1481
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31311_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151462148
                                TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                +g+W++eEd +l+ ++++ G+g +W + ++++g++R++k+c++rw++yl
  Cotton_A_31311_BGI-A2_v1.0 14 KGPWSPEEDAKLKAYIEENGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                                79*********************************************97 PP
2Myb_DNA-binding39.61.2e-1269111246
                                 SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 g++++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Cotton_A_31311_BGI-A2_v1.0  69 GAFSEEEDNIICSLYINIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                 79*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.234962IPR017930Myb domain
SuperFamilySSF466895.01E-2611109IPR009057Homeodomain-like
SMARTSM007173.7E-121364IPR001005SANT/Myb domain
PfamPF002498.1E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-241569IPR009057Homeodomain-like
CDDcd001674.71E-91662No hitNo description
PROSITE profilePS5129422.60963117IPR017930Myb domain
SMARTSM007172.8E-1167115IPR001005SANT/Myb domain
PfamPF002492.3E-1169111IPR001005SANT/Myb domain
CDDcd001676.39E-870113No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2470117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE ENGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGA FSEEEDNIIC SLYINIGSRW SIIAAQLPGR TDNDIKNYWN TRLKKKLLGK  120
QRKEQQARRA SWLTVKQEMT RESGDYMLPG MVSQPPYWPQ QPPVIPFTTT TNQDPPLPKD  180
QESIKNLLIK LGGRFSDDHH PQSSTSTPIP NPMNSSRYPL DVSFAQDQLY ENSMNNTVSP  240
ASSISPINST CSQVTNSTHF NTNEAAVPND MFQGLDGFTD ELRELIYSNN QQIMNGLEGF  300
YGTDNMVDGS STTGSSSVES SSWGDIYSLG FPQLVTGFEP CQQNMPQASN YGEQYCTWAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00089SELEXTransfer from AT3G49690Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527200.0KM052720.1 Gossypium hirsutum RAX-like transcription factor RAX1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017630064.10.0PREDICTED: transcription factor RAX3
SwissprotQ9M2Y97e-85RAX3_ARATH; Transcription factor RAX3
TrEMBLA0A1U8IVX40.0A0A1U8IVX4_GOSHI; transcription factor RAX3-like
STRINGGorai.007G227500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29412568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-76myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]