PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31319_BGI-A2_v1.0
Common NameF383_11071
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 675aa    MW: 74944.7 Da    PI: 6.987
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31319_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12325381155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Cotton_A_31319_BGI-A2_v1.0 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARAYDLAALKYWG 381
                                 78*******************87776664446655.77******************98 PP
2AP246.41e-14426475355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cotton_A_31319_BGI-A2_v1.0 426 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 475
                                 9***************988532...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-9325381IPR001471AP2/ERF domain
CDDcd000181.71E-18325389No hitNo description
SuperFamilySSF541712.22E-14325391IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-12326390IPR001471AP2/ERF domain
SMARTSM003801.1E-22326395IPR001471AP2/ERF domain
PROSITE profilePS5103217.451326389IPR001471AP2/ERF domain
PRINTSPR003672.5E-6327338IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-17424484IPR016177DNA-binding domain
CDDcd000182.16E-24424485No hitNo description
Gene3DG3DSA:3.30.730.101.6E-18425483IPR001471AP2/ERF domain
SMARTSM003803.7E-33425489IPR001471AP2/ERF domain
PROSITE profilePS5103219.19425483IPR001471AP2/ERF domain
PfamPF008471.8E-9426475IPR001471AP2/ERF domain
PRINTSPR003672.5E-6465485IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MKSMSNDDNN NNNNNSSNWL GFSLSSHMKM EVSNQGHNSN HKTLSAASGV TTAVPSSFFP  60
SPPSHLSYGL YYEGENGGLY SHFPVMPLKS DGSLCLMEAL GRSQSQAMVP TSTPKLEDFF  120
GGATMGTHHY ESSDRETMAL SLDSMYYHQN PNQDHNSQNC LDHLQHSSRQ QHHQHQLQVQ  180
QYQYYSGYRN QEMLLAEEAD QETHVTDCNL QLPTMADDGS AAMKHWASRN YSTEHSAMNQ  240
KMIGCMGDNG ADSGSIGAMA YGDLQSLSLS MSPGSQSSSV AGSQQISPSA TDYAAMETKK  300
RGPEKVDQKQ IAHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQSRKGRQG  360
GYDMEEKAAR AYDLAALKYW GPSTHINFPL ENYQKELEEM KNMTRQEYVA HLRRKSSGFS  420
RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGANAVT  480
NFDITRYDVE RIMASSTLLA GDLARRNKDI GPANETINHN LLAHNSYGET NISPKNDGSQ  540
PDWKIVLHQS PEQQMEMKQA NMIENYKRQD FSLAPDNVVG TDTINSGQRE VDDSNKMGTH  600
FSNASSLLTS LSSSTQGSSG SLDRNSLPLP FAMPAPPTKL FTSSTNSLNS WIPSAQLRPA  660
LAVPTVPVFT AWTDA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6144281e-101JX614428.1 Gossypium hirsutum clone NBRI_GE57792 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017627794.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-144CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0B0NC590.0A0A0B0NC59_GOSAR; AP2-like ethylene-responsive transcription factor ANT
STRINGGorai.007G226500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]