PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_31330_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 245aa    MW: 27328.7 Da    PI: 7.0286
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_31330_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-201877357
                                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                +R+++tkeq+ +Le+++ +  r+psa+++++++++l    +++ ++V++WFqN++a++++
  Cotton_A_31330_BGI-A2_v1.0 18 SRWNPTKEQISILESFYLQgLRTPSADQIQQITSRLkaygSIEGKNVFYWFQNHKARQRQ 77
                                6*****************99**************************************97 PP
2Wus_type_Homeobox113.21.3e-361779365
           Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                 +RW+Pt+eQi iLe+ y +GlrtP++++iq+it++L++yG ie+kNVfyWFQN+kaR+rqkq
  Cotton_A_31330_BGI-A2_v1.0 17 DSRWNPTKEQISILESFYLQGLRTPSADQIQQITSRLKAYGSIEGKNVFYWFQNHKARQRQKQ 79
                                68***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.8671378IPR001356Homeobox domain
SuperFamilySSF466896.84E-131584IPR009057Homeodomain-like
SMARTSM003892.4E-61582IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-81877IPR009057Homeodomain-like
PfamPF000465.2E-181877IPR001356Homeobox domain
CDDcd000863.18E-61973No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MEGGNMDTSG DGGTTGDSRW NPTKEQISIL ESFYLQGLRT PSADQIQQIT SRLKAYGSIE  60
GKNVFYWFQN HKARQRQKQK QQNLAYINRY LYRTTQPVYS PPPHGINVVC GPHFLPQVQL  120
GIYPQIQCPK VLLPGGDKRR ERPAKMGKPL QRDYNTMLPD AENFEGLLNI NNHETLELFP  180
LHPTGLLETK ETLMSPLGST NSAGISIITP SISCETTAGI DQEGSGTGEQ QFFDFFTCQG  240
SSARD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5279931e-41HQ527993.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GID8O simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017633108.10.0PREDICTED: WUSCHEL-related homeobox 2-like
TrEMBLA0A2P5XL031e-179A0A2P5XL03_GOSBA; Uncharacterized protein
STRINGGorai.001G108900.11e-161(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-41WUSCHEL related homeobox 2