PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31334_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 316aa MW: 33843.6 Da PI: 9.4649

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31334_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s+ntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+rknkk++ Cotton_A_31334_BGI-A2_v1.0 66 PEAALKCPRCESSNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRKNKKNK 126 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-34	50	120	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-33	69	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.506	70	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVFSSHVPIY LDPPNLQQQH QQGNGSENPQ FSPLPPPPPH VGAGGPASIR PSSMADRARL 60 AKIPQPEAAL KCPRCESSNT KFCYFNNYSL SQPRHFCKTC RRYWTRGGAL RNVPVGGGCR 120 KNKKNKSSSS EPPAEKQTGN SNSKNSVVIP TEITGHLPFM ASLQNFSQYG VGNIGLNFGG 180 IQGETSGASR QADMGFQIGT NSGMSSASIL SSSSGGGGTH QHQQFPFFDP SNGLYAFQSE 240 GMEGSSSMVG ESQLLRSMSP CSRASHLAPV KMENNHQGLN ISRPQLGVSE NNQYWGGNSW 300 TNILGLNSSG STNHLL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00281	DAP	Transfer from AT2G28810	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640442.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like isoform X1
TrEMBL	A0A1U8P487	0.0	A0A1U8P487_GOSHI; dof zinc finger protein DOF2.2-like isoform X1
STRING	Gorai.001G109300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1713	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	5e-52	Dof family protein