PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_31831_BGI-A2_v1.0

Common Name

F383_34958

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

SBP

Protein Properties

Length: 327aa MW: 36316.9 Da PI: 8.5772

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_31831_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.9	4.6e-41	173	250	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ Cotton_A_31831_BGI-A2_v1.0 173 RCQAEGCNADLTHAKHYHRRHKVCEFHSKASTVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSQQ 250 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.4E-35	168	235	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.368	171	248	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.01E-38	172	251	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	9.2E-31	174	247	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MLEYEWGNPS SIMLSGEETA QEPDPNRQLF HHYATTTTTT HHQPYNETLL SHHNPTVFSH 60 QNLFHNPNQA QPPQHPATLH SLYDPHSYSA TSAYSTAHAS LLSLDPVSAV GGSGGGYFLV 120 PKTEEVSRPV DFTARIGLNL GGRTYFSSAE DDFVNRLYRR SRPGDLSSTN SPRCQAEGCN 180 ADLTHAKHYH RRHKVCEFHS KASTVIAAGL TQRFCQQCSR FHLLSEFDNG KRSCRKRLAD 240 HNRRRRKSQQ QQPNTTQEHQ KHLQLESGGN PSCDNPPRSP PDSGVQSSSS VTVAASPPRI 300 SLDCFRQRPH NATVSSSSSG TLFFSSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-30	174	247	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017641940.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_017641946.1	0.0	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	8e-88	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A0B0N0S5	0.0	A0A0B0N0S5_GOSAR; Squamosa promoter-binding-like protein 8
STRING	Gorai.001G176000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7010	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-79	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]