PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32098_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

G2-like

Protein Properties

Length: 374aa MW: 41288.5 Da PI: 8.1663

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32098_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.1	9.8e-34	44	98	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG++kAtPkt++++m+++gLtl+h+kSHLQkYRl Cotton_A_32098_BGI-A2_v1.0 44 KPRLKWTPDLHERFIEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRL 98 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.904	41	101	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-31	42	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.6E-17	43	100	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-23	44	99	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-9	46	97	IPR001005	SANT/Myb domain
Pfam	PF14379	4.1E-25	145	190	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MYHHHHQGKN IQACLRTAIP DRHLLLQGGN GTGDSGLVLS TDAKPRLKWT PDLHERFIEA 60 VNQLGGADKA TPKTVMKIMG IPGLTLYHLK SHLQKYRLSK NPHGQANNGS NKIGAVAMPA 120 DKISEANGIQ MNNSTVGPQT NRGLQISEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY 180 LQSVLEKAQE SLGRQNPGSM GLEAAQLQLS ELVSKVSNQC LDSTLMDLKE LQGLCHQKTK 240 TNSIDSCLTS IEGSQKDQEI HNNGICLRPY SLVAEDPWLP QTGLRENKMV PSSTAKIADR 300 SSNGSDLSIT VGLQGDKGKG FNSNSSRFSE RKFNGRNEDD GLHYFATKLD LNVDEENDVA 360 SRCKQFDLNG LSWG

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MYHHHHQGKN IQACLRTAIP DRHLLLQGGN GTGDSGLVLS TDAKPRLKWT PDLHERFIEA  60
VNQLGGADKA TPKTVMKIMG IPGLTLYHLK SHLQKYRLSK NPHGQANNGS NKIGAVAMPA  120
DKISEANGIQ MNNSTVGPQT NRGLQISEAL QMQIEVQRRL HEQLEVQRHL QLRIEAQGKY  180
LQSVLEKAQE SLGRQNPGSM GLEAAQLQLS ELVSKVSNQC LDSTLMDLKE LQGLCHQKTK  240
TNSIDSCLTS IEGSQKDQEI HNNGICLRPY SLVAEDPWLP QTGLRENKMV PSSTAKIADR  300
SSNGSDLSIT VGLQGDKGKG FNSNSSRFSE RKFNGRNEDD GLHYFATKLD LNVDEENDVA  360
SRCKQFDLNG LSWG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-22	44	100	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:12008900}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX587315	3e-68	JX587315.1 Gossypium hirsutum clone NBRI_GE21375 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016674129.1	0.0	PREDICTED: two-component response regulator ORR24-like
Refseq	XP_017618814.1	0.0	PREDICTED: myb-related protein 1-like
Swissprot	Q9FK47	1e-137	PHLA_ARATH; Myb-related protein 1
TrEMBL	A0A1U8IE94	0.0	A0A1U8IE94_GOSHI; two-component response regulator ORR24-like
STRING	Gorai.013G122900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3336	27	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18240.4	1e-139	myb-related protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]