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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Cotton_A_32368_BGI-A2_v1.0 |
| Common Name | F383_20379 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
BBR-BPC |
| Protein Properties |
Length: 265aa MW: 29631.8 Da PI: 9.8631 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_32368_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 329.8 | 7.5e-101 | 1 | 265 | 29 | 301 |
GAGA_bind 29 mssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidsl 111
ms++aerda+irern+a+se+k+a+a+rd+a++qrdkalaer+ al+erdn+l+ l+ +en+ ++ p+g+++ +g ++++ +
Cotton_A_32368_BGI-A2_v1.0 1 MSILAERDAAIRERNIAVSERKEALAARDEALQQRDKALAERDSALIERDNALAVLQCRENA--KNFPFGSGIQRGRTCMHLS 81
99*********************************************************998..7789999999999999955 PP
GAGA_bind 112 qqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksi 194
+ ++++++ +e++ ++alp+++ ++ + ++ +k+++ +k +k +k kk e+ +++v++e ++ k+e++s
Cotton_A_32368_BGI-A2_v1.0 82 YH--SSDMDETLN--HEMHVTNALPVSTIPSAEGKSCPVKRTKVNKAVSSKSPRKIKKVAEDLNRQVDTEV--RKCKSEWNSE 158
44..566666555..59******************9999999999999999999*************9999..57******** PP
GAGA_bind 195 dlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
++l +++De+++ vPvCsCtG++r CYkWGnGGWqS+CCtt+iS yPLP+++++r+aR++grKmS+++f+klL++LaaeGy
Cotton_A_32368_BGI-A2_v1.0 159 HIGLSLINFDETKISVPVCSCTGVPRHCYKWGNGGWQSSCCTTSISSYPLPQMPNKRHARVGGRKMSGSVFTKLLSRLAAEGY 241
*********************************************************************************** PP
GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
d+s+p+DLk++WA+HGtn+++ti+
Cotton_A_32368_BGI-A2_v1.0 242 DVSKPLDLKTYWARHGTNRYITIK 265
***********************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MSILAERDAA IRERNIAVSE RKEALAARDE ALQQRDKALA ERDSALIERD NALAVLQCRE 60
NAKNFPFGSG IQRGRTCMHL SYHSSDMDET LNHEMHVTNA LPVSTIPSAE GKSCPVKRTK 120
VNKAVSSKSP RKIKKVAEDL NRQVDTEVRK CKSEWNSEHI GLSLINFDET KISVPVCSCT 180
GVPRHCYKWG NGGWQSSCCT TSISSYPLPQ MPNKRHARVG GRKMSGSVFT KLLSRLAAEG 240
YDVSKPLDLK TYWARHGTNR YITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
