PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32389_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 840aa MW: 92081.3 Da PI: 6.0988

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32389_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.5	3.7e-21	149	204	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t+ q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k Cotton_A_32389_BGI-A2_v1.0 149 KKKYHRHTPRQIQELESFFKECPHPDEKQRMELSRRLGLEGKQIKFWFQNRRTQMK 204 79999************************************************999 PP
2	START	170.2	1.4e-53	350	572	2	205
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdet 75 +a++a++el+k+a+ + p+W k es+n +e++++f++ + + +ea +a+g+v lve l+d + +W e+ Cotton_A_32389_BGI-A2_v1.0 350 VALSAMDELIKMAQMDNPLWIKGMgggmESLNVEEYRRNFSSCIGmkpssYATEATKATGLVYLRGLALVEALMDAN-RWVEM 431 7899**********************************98888****************************.* PP -S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 76 la....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRael 147 ++ +a+t++v+ssg ++lq+m ae+q+lsplvp R + f+R+++q+++g+w++vdvS+d+ q+ ++++ + +++ Cotton_A_32389_BGI-A2_v1.0 432 FPcmisRAATIDVLSSGtgvtrdNELQVMDAEFQVLSPLVPvRQVRFIRFCKQHSEGVWAVVDVSIDPSQDATNTQMFPNCRR 514 ******************************************************************************* PP SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 lpSg++i++++ sk+twveh +++++ +h ll++l++sg +ga +w+atlqrqc Cotton_A_32389_BGI-A2_v1.0 515 LPSGCVIQDVDTKCSKITWVEHSEYDDSAVHHLLQPLLSSGFGFGAHRWLATLQRQCD 572 ******************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-22	136	206	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.76E-20	137	206	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.54	146	206	IPR001356	Homeobox domain
SMART	SM00389	1.3E-18	148	210	IPR001356	Homeobox domain
Pfam	PF00046	9.0E-19	149	204	IPR001356	Homeobox domain
CDD	cd00086	2.19E-19	149	206	No hit	No description
PROSITE pattern	PS00027	0	181	204	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	37.59	340	576	IPR002913	START domain
SuperFamily	SSF55961	3.71E-30	342	572	No hit	No description
CDD	cd08875	3.11E-105	344	571	No hit	No description
SMART	SM00234	1.3E-34	349	573	IPR002913	START domain
Pfam	PF01852	3.4E-46	350	572	IPR002913	START domain
SuperFamily	SSF55961	4.67E-19	602	836	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 840 aa Download sequence Send to blast
MSFGGLINSS SSSDSGSSGA RVVVADFVPQ NNMLSYAIVE PPLLTQHIPI SMLSSPSLSL 60 SYVLAHLPLP LPPPLPPSLF LFLSLSRDLV LVQKRMDGHG EMGLIGENFD PGFVGRMKED 120 GYEIRSESDN FDVASGDDQD AAADGPSKKK KYHRHTPRQI QELESFFKEC PHPDEKQRME 180 LSRRLGLEGK QIKFWFQNRR TQMKTQLERH ENVILRQEND KLRAENDLLK QAMTTPICSS 240 CGGPAVPGEI SYEQHQLRIE NARLKDELTR ICALTNKFLG RPLSSSGSPI PPHGLNSNLE 300 LAVGRNGFGG LNNAGTSLPM GFEFGDGSMM SIVKPMVNEM QYDRSAFVDV ALSAMDELIK 360 MAQMDNPLWI KGMGGGMESL NVEEYRRNFS SCIGMKPSSY ATEATKATGL VYLRGLALVE 420 ALMDANRWVE MFPCMISRAA TIDVLSSGTG VTRDNELQVM DAEFQVLSPL VPVRQVRFIR 480 FCKQHSEGVW AVVDVSIDPS QDATNTQMFP NCRRLPSGCV IQDVDTKCSK ITWVEHSEYD 540 DSAVHHLLQP LLSSGFGFGA HRWLATLQRQ CDCMAILMSQ DIPGENNTGI TPAGRKSMIK 600 LAQRMTYNFC AGVCASSVHK WDKLSVGNVG EDVRVMTRKN INDPGEPHGV VLSAATSVWM 660 PVTQERLFDF LRDERMRSEW DILSHGGPMQ EMVHVAKGMG HGNCVSLLRG SAINANENNM 720 LILQETWSDA SGALVVYAPV DISSMSVVMN GGDSTYVALL PSGFAILPGI SPSYHGGRSE 780 SNGALVKPEI DGSIVSGCLL TVGFQILVNN VPTAKLTVES VETVNNLISC TIQKIKAALT

Sequence ? help Back to Top

Protein Sequence Length: 840 aa Download sequence Send to blast

MSFGGLINSS SSSDSGSSGA RVVVADFVPQ NNMLSYAIVE PPLLTQHIPI SMLSSPSLSL  60
SYVLAHLPLP LPPPLPPSLF LFLSLSRDLV LVQKRMDGHG EMGLIGENFD PGFVGRMKED  120
GYEIRSESDN FDVASGDDQD AAADGPSKKK KYHRHTPRQI QELESFFKEC PHPDEKQRME  180
LSRRLGLEGK QIKFWFQNRR TQMKTQLERH ENVILRQEND KLRAENDLLK QAMTTPICSS  240
CGGPAVPGEI SYEQHQLRIE NARLKDELTR ICALTNKFLG RPLSSSGSPI PPHGLNSNLE  300
LAVGRNGFGG LNNAGTSLPM GFEFGDGSMM SIVKPMVNEM QYDRSAFVDV ALSAMDELIK  360
MAQMDNPLWI KGMGGGMESL NVEEYRRNFS SCIGMKPSSY ATEATKATGL VYLRGLALVE  420
ALMDANRWVE MFPCMISRAA TIDVLSSGTG VTRDNELQVM DAEFQVLSPL VPVRQVRFIR  480
FCKQHSEGVW AVVDVSIDPS QDATNTQMFP NCRRLPSGCV IQDVDTKCSK ITWVEHSEYD  540
DSAVHHLLQP LLSSGFGFGA HRWLATLQRQ CDCMAILMSQ DIPGENNTGI TPAGRKSMIK  600
LAQRMTYNFC AGVCASSVHK WDKLSVGNVG EDVRVMTRKN INDPGEPHGV VLSAATSVWM  660
PVTQERLFDF LRDERMRSEW DILSHGGPMQ EMVHVAKGMG HGNCVSLLRG SAINANENNM  720
LILQETWSDA SGALVVYAPV DISSMSVVMN GGDSTYVALL PSGFAILPGI SPSYHGGRSE  780
SNGALVKPEI DGSIVSGCLL TVGFQILVNN VPTAKLTVES VETVNNLISC TIQKIKAALT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017646295.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A1U8NWL9	0.0	A0A1U8NWL9_GOSHI; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRING	Gorai.004G120700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]