PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32573_BGI-A2_v1.0

Common Name

F383_11348

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C3H

Protein Properties

Length: 242aa MW: 26403.6 Da PI: 8.2551

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32573_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.8	4.4e-09	1	17	10	26
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 +r+G CkyG++C+F+H+ Cotton_A_32573_BGI-A2_v1.0 1 MRNGSCKYGANCRFNHP 17 89**************9 PP
2	zf-CCCH	28	3.7e-09	129	155	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ Cotton_A_32573_BGI-A2_v1.0 129 PGQPECSYFLKTGDCKFKSNCKYHHPK 155 5789*********************96 PP
3	zf-CCCH	38.1	2.6e-12	176	200	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Cotton_A_32573_BGI-A2_v1.0 176 DQSICSYYSRYGICKFGPACKFDHS 200 6789********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00642	1.4E-6	1	17	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.164	1	19	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	21	1	18	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.7E-4	2	16	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.333	128	156	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	128	155	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-6	130	155	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.81E-6	132	157	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.83E-6	172	200	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.6E-4	174	201	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.53	174	202	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-9	176	200	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	4.6E-5	178	201	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MRNGSCKYGA NCRFNHPDPK LAGACEPPSG YGNGGSVSLQ AASQVNMASW SAPMTLNDSA 60 AYFPIMFSPT QGVPPPNPEW NGYQTTLYPP LERGLHPTPA YVMSNPSTET TAYTHHQPQM 120 VVDDFPERPG QPECSYFLKT GDCKFKSNCK YHHPKNRVPK PTPCALSDKG LPLRPDQSIC 180 SYYSRYGICK FGPACKFDHS IQATPPTVSG LDQPRPFSHS TATEQAGIAR SNRADTAVQQ 240 SV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016744401.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 67-like isoform X2
Refseq	XP_017635101.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 43-like
Swissprot	Q9STM4	3e-82	C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBL	A0A0B0PW04	1e-180	A0A0B0PW04_GOSAR; Uncharacterized protein
STRING	Gorai.001G061800.1	1e-178	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4176	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-84	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]