PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32584_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 188aa    MW: 21841.7 Da    PI: 10.9836
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32584_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.4e-1179135561
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                                 ++ rr+++NRe+ArrsR RK++ +e+L++ +  L  eN++L  +l  l  ++ ++++
  Cotton_A_32584_BGI-A2_v1.0  79 RKRRRMISNRESARRSRMRKQKHLENLRNQANRLRIENRELTYRLRFLLYHCHRVRT 135
                                 5789*************************************9998877777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-1175139IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.1E-877132No hitNo description
PROSITE profilePS5021710.57677140IPR004827Basic-leucine zipper domain
PfamPF001704.1E-879134IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.65E-1079129No hitNo description
CDDcd147026.72E-1880131No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MLSTVPAIIS SNPMMESDPF PSLQSAWDCS QLFSTTQSVG PARSGSASTE LNQTQTQTQT  60
HSNSGLDESN KTLSIIDERK RRRMISNRES ARRSRMRKQK HLENLRNQAN RLRIENRELT  120
YRLRFLLYHC HRVRTDNDRL RSESTLLRQK LSDMHQNLLF KQLQQFSSAW PCNNVTVMSE  180
QIPPPLII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17882RKRRR
27899RKRRRMISNRESARRSRMRKQK
39198RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017635767.11e-136PREDICTED: bZIP transcription factor 44-like
TrEMBLA0A1U8MLA81e-129A0A1U8MLA8_GOSHI; basic leucine zipper 43-like
STRINGGorai.008G085300.11e-118(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33382665
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.24e-32basic leucine-zipper 6