PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32641_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 361aa    MW: 40740.4 Da    PI: 9.0591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32641_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.91.5e-12139231192
                                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfv 80 
                                 ffkvlt+ d  ++  l+lp +++++   ++ ++++k+l+++d  g  W++++++ ++  +r  + +GW +Fv+ ++L++gD +
  Cotton_A_32641_BGI-A2_v1.0 139 FFKVLTKIDIERT--LSLPDSYLQALqqSQRSHGGKKLKVKDDIGILWNFRCTIrSGAVRRLHIVSGWIQFVRFKRLNTGDAI 219
                                 8999999998877..9*******9888755566899****************77344445588999***************** PP

                                 EEEE-SSSEE.. CS
                          B3  81 vFkldgrsefel 92 
                                 v++ d+++ + +
  Cotton_A_32641_BGI-A2_v1.0 220 VLYKDDDTVTGP 231
                                 ***666555445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508637.2742101IPR003340B3 DNA binding domain
CDDcd100171.21E-10394No hitNo description
Gene3DG3DSA:2.40.330.101.9E-11392IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-9391IPR015300DNA-binding pseudobarrel domain
PfamPF023622.3E-7490IPR003340B3 DNA binding domain
SMARTSM010190.264103IPR003340B3 DNA binding domain
SuperFamilySSF1019362.49E-13134227IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-14134226IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.009137241IPR003340B3 DNA binding domain
CDDcd100173.93E-13138239No hitNo description
PfamPF023622.8E-10139227IPR003340B3 DNA binding domain
SMARTSM010190.0018139241IPR003340B3 DNA binding domain
PROSITE profilePS508637.119242348IPR003340B3 DNA binding domain
CDDcd100172.68E-6247346No hitNo description
Gene3DG3DSA:2.40.330.103.7E-8247334IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.43E-6247334IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MAIFVKVLTK IDIERTLSLP DSCLQASPQS QRSHGGENLQ VKDDVGILWN FHCTIRSGVF  60
PKLEIVSGWV QFVRFKQLNT GDAIVLYKDD DTLTGKHTTS ELEEQPTGLR KQMIDQLTPL  120
NPTTASSKGY RLSSNMASFF KVLTKIDIER TLSLPDSYLQ ALQQSQRSHG GKKLKVKDDI  180
GILWNFRCTI RSGAVRRLHI VSGWIQFVRF KRLNTGDAIV LYKDDDTVTG PHYKIEVVKG  240
HGDNYSVLTK IDIERTLSLP DNRLQASPQS QRSHGDGGEN LQVKDDVGIL WNFHCTTRSG  300
VVPKLDMVSG WIQFVRFKQL NTGDVIVLNK DDDTLTGPHY KIEVFKGHGD DYSSFVHKNQ  360
I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458784.11e-64PREDICTED: uncharacterized protein LOC105779536
TrEMBLA0A2P5X6J01e-144A0A2P5X6J0_GOSBA; Uncharacterized protein
STRINGGorai.012G151100.13e-62(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3587022