PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32664_BGI-A2_v1.0
Common NameF383_02876
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 445aa    MW: 48279.5 Da    PI: 8.5423
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32664_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.2e-29103159259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 +DgynWrKYGqK vkg+ef rsYYrCt+++C+vkk++e+s+  +k+v+++Y g+H+h 
  Cotton_A_32664_BGI-A2_v1.0 103 EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCQVKKQLEHSH-AGKMVDTVYFGQHDHA 159
                                 7***************************************9.9**************7 PP
2WRKY105.23.4e-33277335159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                 ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d k+v++tYeg+H+h+
  Cotton_A_32664_BGI-A2_v1.0 277 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDAKLVITTYEGKHDHD 335
                                 58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.36897161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-2598161IPR003657WRKY domain
SuperFamilySSF1182902.62E-23100161IPR003657WRKY domain
SMARTSM007742.1E-32102160IPR003657WRKY domain
PfamPF031061.4E-22103158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-35264337IPR003657WRKY domain
SuperFamilySSF1182904.58E-29270337IPR003657WRKY domain
PROSITE profilePS5081135.921272337IPR003657WRKY domain
SMARTSM007741.1E-38277336IPR003657WRKY domain
PfamPF031064.4E-26278334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MVSSGECVTD EVGTDKVQSP DAGSHALQQI SDSKIQSSQS VEGRGTLALV SKENPLPISV  60
IHASQSQQQG NAYSMTSKKQ SLTPSPSPGI DGSSPIVREK ASEDGYNWRK YGQKLVKGNE  120
FVRSYYRCTH PNCQVKKQLE HSHAGKMVDT VYFGQHDHAK PLTPPVAVGF VVSVVEERRD  180
NASPTVIKDK SLGAHIQTPR LIEPGDSSQR LPIAASEDLK GASSKSNGMQ NIAGNDDGHL  240
ISKRRKKEND IVDASPVHKP TSESPMVIKT LSEVDIVNDG YRWRKYGQKL VKGNPNPRSY  300
YRCSNPGCPV KKHVERASHD AKLVITTYEG KHDHDLPPTR TVTYNIIGVN VDSAAHNSES  360
GTKVEKRETI NSSSGAENKP SEQSNGKSRT KIEVSGTVHV GTVNAPTLGP ESGSNEQRSG  420
KLDHNEESEV VGYTAHCKSS SQNTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-37104338175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606310.10.0PREDICTED: WRKY transcription factor 1
SwissprotQ9SI374e-92WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A0B0PEV30.0A0A0B0PEV3_GOSAR; WRKY transcription factor 1-like protein
STRINGGorai.001G192900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-93zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]