PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32765_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 547aa    MW: 59802.5 Da    PI: 7.9154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32765_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-053624011255
                                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Cotton_A_32765_BGI-A2_v1.0 362 RREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 401
                                 9*****************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.868350400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0015361406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.88E-6362405No hitNo description
SuperFamilySSF474594.84E-12362419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-13363418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MENQFFLGAH GPPLDFGQAL SSPLSTAWQS LSSPMEIQAT ELNSTDYGLQ FESALSSMVS  60
SPVGSNSNLS NESFMIRELI GKLGSIGGNA GEISPQPLIA NSTNTSCYST PLNSPPKLSL  120
PLNTLVKEKL PSLGKSMGMN SSVADFSADP GFAERAAKFS CFGSRSFNGR TSQLRLNDTS  180
SPSPSLSPYR SNPLSSNPKI PRVSSSPSLN AMVIEPLQDR SELSHSQEES SITNGDPSLK  240
PSKGTNSRKR KTVPKAKTNE ISTSPSTNAP KGTESNEKRC KSTESNGNQN DSIKAEDDAK  300
GNTKPPEPPK DYIHVRARRG QATDSHSLAE RVRIFIFLKE KITGNFAFLS LILILSIILI  360
VRREKISERM KLLQNLVPGC NKVTGKALML DEIINYVQSL QRQVEFLSMK LASVNTRLDF  420
NMDSLMPKEM FQSNNSLAHQ IFPMDSSATA IFEQQNPALH HHHANMSNGA MSQCLVGPLD  480
TSIHPNLNTH LPQIHHFTQS MPQYPTFCEG DLQTIVEMGL GQNQSREMAL QSEFQGSNQV  540
SQMKVEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246251SRKRKT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628458.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A0B0PBI80.0A0A0B0PBI8_GOSAR; Transcription factor bHLH62-like protein
STRINGGorai.001G103300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-102bHLH family protein