PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32808_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 224aa    MW: 26283.1 Da    PI: 9.4298
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32808_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-1861114356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k+ ++t+eqle Le  F+++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k
  Cotton_A_32808_BGI-A2_v1.0  61 KKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGLQPRQIAVWFQNRRARWK 114
                                 56679************************************************9 PP
2HD-ZIP_I/II109.42.5e-3560152193
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekk+rl++eq++ LE+sF+e+ kL+p+rK++l+reLglqprq+avWFqnrRAR+k+k+lE+ ++aL++++  +++e+++L++e
  Cotton_A_32808_BGI-A2_v1.0  60 EKKKRLTNEQLEWLEMSFQEDIKLDPRRKMKLSRELGLQPRQIAVWFQNRRARWKAKELERLCNALQHHLHLVSKETQKLQHE 142
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelke 93 
                                 v++L++ l+e
  Cotton_A_32808_BGI-A2_v1.0 143 VSKLKAMLRE 152
                                 *****98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.16756116IPR001356Homeobox domain
SMARTSM003894.8E-1558120IPR001356Homeobox domain
SuperFamilySSF466892.05E-1758117IPR009057Homeodomain-like
PfamPF000469.6E-1661114IPR001356Homeobox domain
CDDcd000861.40E-1561117No hitNo description
Gene3DG3DSA:1.10.10.602.3E-1966116IPR009057Homeodomain-like
PRINTSPR000313.9E-58796IPR000047Helix-turn-helix motif
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PRINTSPR000313.9E-596112IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEWNGTLSFV PGQPPSLTSL YNYNYDQYFP GMEMMNVGLA EAAAMEKKKK KKKIYMNNEE  60
KKKRLTNEQL EWLEMSFQED IKLDPRRKMK LSRELGLQPR QIAVWFQNRR ARWKAKELER  120
LCNALQHHLH LVSKETQKLQ HEVSKLKAML REQPTRNQVS TGYTEISGEE TIESTLIHCS  180
NKYMVVPNNH HPIADQCSYL FNVDKNNPNP VGSTYWGEQL PTNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14652KKKKKKK
24663KKKKKKKIYMNNEEKKKR
34963KKKKIYMNNEEKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6147860.0JX614786.1 Gossypium hirsutum clone NBRI_GE58425 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017613966.11e-169PREDICTED: putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2P5WNK01e-167A0A2P5WNK0_GOSBA; Uncharacterized protein
STRINGGorai.009G409600.11e-153(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2846333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-36homeobox 51