PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_32830_BGI-A2_v1.0
Common NameF383_02612
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 251aa    MW: 26311.7 Da    PI: 9.6314
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_32830_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-115095555
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                h+++Er RR ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Cotton_A_32830_BGI-A2_v1.0 50 HSIAERLRRVRIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 95
                                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.06E-124399No hitNo description
SuperFamilySSF474591.96E-1643105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.7234594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1647104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-95095IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1251100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MQAKSFVGAN SATEMTQSQG SRPTAGEAVT APEKPKQRVR ARRGQATDPH SIAERLRRVR  60
IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA AVAPLVSEGG  120
GDCIQTSANG GSHPRNSNGD QTPSANDRLT MTEHQVAKLM EEDMGSAMQY LQGKGLCLMP  180
ISLATAISTA TSRSRNPMIN HENPTNGSHL LIQSSGGDGP SSPSMSVLTV QSATMGNGGG  240
LEGGAASVSK P
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF8364320.0KF836432.1 Gossypium hirsutum bHLH4 transcription factor (bHLH4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644442.10.0PREDICTED: transcription factor bHLH66-like
SwissprotQ9ZUG93e-86BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A0B0PS271e-180A0A0B0PS27_GOSAR; Transcription factor bHLH66-like protein
STRINGGorai.010G112200.11e-171(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30422763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.13e-86LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]