PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_32941_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 239aa MW: 27837.7 Da PI: 6.315

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_32941_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.9	3.1e-26	129	179	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAke++v+lT+LK++CR+++I+RWPhRkiksl Cotton_A_32941_BGI-A2_v1.0 129 TASLELDEIQKYFDFPISKAAKEMNVGLTLLKKRCRELNIMRWPHRKIKSL 179 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.927	119	200	IPR003035	RWP-RK domain
Pfam	PF02042	2.1E-22	132	179	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDLGFAKMEN GSEFDYCFNF EENPFGKVEF EVDSFYDFNS PALLPHPQAD NLCIQFMDFE 60 EISSDFALFD QNEDIMADAI KRVVDSFDHH CGNITNSGGS STEASRVIHE IEYGDSHGEK 120 IRSFRRKRTA SLELDEIQKY FDFPISKAAK EMNVGLTLLK KRCRELNIMR WPHRKIKSLK 180 SLIHNVKELG LTNEIVMLEE HQRMLEKVPD LELTDRTKKL RQACFKANYK KRRSLASCY

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX577654	3e-36	JX577654.1 Gossypium hirsutum clone NBRI_GE9518 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017622086.1	1e-174	PREDICTED: protein RKD4
TrEMBL	A0A2P5YAU4	1e-175	A0A2P5YAU4_GOSBA; Uncharacterized protein
STRING	Gorai.003G121600.1	1e-169	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	2e-46	RWP-RK domain-containing protein