PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_33133_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 807aa MW: 87611.8 Da PI: 6.9336

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_33133_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.9e-09	589	626	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cotton_A_33133_BGI-A2_v1.0 589 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 626 664459******************************88 PP
2	BELL	113.3	1.3e-36	448	520	1	72
BELL 1 erqelqkkkakLlslleeV.dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+e ++rY++y+eq+q+v++sF+ v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+ Cotton_A_33133_BGI-A2_v1.0 448 DRIEHQRRKVKLLSMLDEAcERRYNHYCEQMQMVVNSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAISAQL 520 589***********9962689*********************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.7E-77	377	518	IPR006563	POX domain
Pfam	PF07526	1.2E-48	382	517	IPR006563	POX domain
PROSITE profile	PS50071	12.568	567	630	IPR001356	Homeobox domain
CDD	cd00086	6.82E-13	570	631	No hit	No description
SMART	SM00389	1.2E-9	570	634	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.19E-17	572	637	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-29	573	636	IPR009057	Homeodomain-like
Pfam	PF05920	4.1E-18	587	626	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence Send to blast
MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS 60 AVSHQEHQQQ QQQHLEQQIR RDKLRVEGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF 120 NFPSGAAAAA XPAPPATAST ELLDQHVQPN YRAHRPAPGN TNEWYSNRQG VVGGLGQLGE 180 SKSHITRDSL AQQHQQQQQL PSINADSAAA MHLFLMNPQQ RSPSPPPPPP ATSSNTLHML 240 LPNPSTSLQG FNVSGPGGGF GTSTVLSPPQ FTWVPGSAHE GGNNTDSQLS SLNEIGSVVE 300 GQGLSLSLSS SLQHLEAAKA EELRMGDGGL LYYNQGGGSA AQFHQYRNLG SHHQTMHLQG 360 GVGQNQQVHH VGFGSSLGMV NVLRNSKYVK AAQELLEEFC SVGRGQFKKN KFGRNNTNPS 420 SDPVSSGCAG GGGSSSSTKD LPPLSAADRI EHQRRKVKLL SMLDEACERR YNHYCEQMQM 480 VVNSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAISAQL KHSCEMLGEK DGAGSSGITK 540 GETPRLRMLE QSLRQQRAFN QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA 600 DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQET KEEGDHNNNN NNNHTERERN 660 PNNNNNAQTS TPSTTAAPTT TTTTPAGKGS QINATENDPS LIAINTPQCF SENQANPTAT 720 EVAPPISQPF TTTIPHDSDI HHQRIAGTTV AAADYGTTAG GNTDIGSSLI RLGTTTAGDV 780 SLTLGLRHAG NMPENTSSFS VRDFGGC

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence Send to blast

MGIATPPLVA SILSQESQPS KKIHHQIPIQ HKSNNSTNSM SQDYHQAAGI FSFSNGFERS  60
AVSHQEHQQQ QQQHLEQQIR RDKLRVEGFE PPPPPLVGIE EEESTSLPVY ETAGMLSEMF  120
NFPSGAAAAA XPAPPATAST ELLDQHVQPN YRAHRPAPGN TNEWYSNRQG VVGGLGQLGE  180
SKSHITRDSL AQQHQQQQQL PSINADSAAA MHLFLMNPQQ RSPSPPPPPP ATSSNTLHML  240
LPNPSTSLQG FNVSGPGGGF GTSTVLSPPQ FTWVPGSAHE GGNNTDSQLS SLNEIGSVVE  300
GQGLSLSLSS SLQHLEAAKA EELRMGDGGL LYYNQGGGSA AQFHQYRNLG SHHQTMHLQG  360
GVGQNQQVHH VGFGSSLGMV NVLRNSKYVK AAQELLEEFC SVGRGQFKKN KFGRNNTNPS  420
SDPVSSGCAG GGGSSSSTKD LPPLSAADRI EHQRRKVKLL SMLDEACERR YNHYCEQMQM  480
VVNSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAISAQL KHSCEMLGEK DGAGSSGITK  540
GETPRLRMLE QSLRQQRAFN QMGMMEQEAW RPQRGLPERS VNILRAWLFE HFLHPYPSDA  600
DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQET KEEGDHNNNN NNNHTERERN  660
PNNNNNAQTS TPSTTAAPTT TTTTPAGKGS QINATENDPS LIAINTPQCF SENQANPTAT  720
EVAPPISQPF TTTIPHDSDI HHQRIAGTTV AAADYGTTAG GNTDIGSSLI RLGTTTAGDV  780
SLTLGLRHAG NMPENTSSFS VRDFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	576	634	5	63	Homeobox protein Meis2
3k2a_B	2e-16	576	634	5	63	Homeobox protein Meis2
4xrm_A	3e-16	576	634	5	63	Homeobox protein Meis2
4xrm_B	3e-16	576	634	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017642203.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_017642205.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-178	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A1U8K8U1	0.0	A0A1U8K8U1_GOSHI; BEL1-like homeodomain protein 4
STRING	Gorai.007G207200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-163	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]