PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_33225_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 254aa    MW: 27796.1 Da    PI: 7.4075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_33225_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00014172194123
                                 EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                 ++C++Cg  Fs+   L  H+r+H
  Cotton_A_33225_BGI-A2_v1.0 172 HECSICGAEFSSGQALGGHMRRH 194
                                 78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.3E-10102127IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-9102125No hitNo description
PROSITE profilePS501579.182103130IPR007087Zinc finger, C2H2
SMARTSM003550.45103125IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576672.28E-9167194No hitNo description
Gene3DG3DSA:3.30.160.608.0E-4168194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.1E-13171195IPR007087Zinc finger, C2H2
PROSITE profilePS501579.868172199IPR007087Zinc finger, C2H2
SMARTSM003550.01172194IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280174194IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVMEGQQEVV LCKDELQIIK GKRTKRPRPV SPLTLATAST TTTSTGGESR TSNNDSSITT  60
SVEPPESCWE DEENMAYCLM LLAQGQTRKP SEPTGKTAGM NVHQCKTCNR CFPSFQALGG  120
HRASHKKPKL HSEENTKRLK FVKEDDDRNT TLSLQITSKA PALCNGTKSK VHECSICGAE  180
FSSGQALGGH MRRHRTSTNA TTTVGTSTSG ETEDLSSNKP TTVLQLDLNL PAPEDDRHNE  240
SNFPFTETIN LCYC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12428KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017614756.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A1U8IXQ51e-175A0A1U8IXQ5_GOSHI; zinc finger protein ZAT5-like
STRINGGorai.009G412900.11e-174(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2498034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03510.11e-44C2H2 family protein