PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_33477_BGI-A2_v1.0

Common Name

F383_25955

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 298aa MW: 33939.5 Da PI: 6.6692

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_33477_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.8	1.2e-50	10	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lp+GfrF Ptdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g r+nra+ sgyW Cotton_A_33477_BGI-A2_v1.0 10 LPAGFRFYPTDEELVMHYLCRKCASQSIAV-PFIAELDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGLRPNRAAGSGYW 91 799**********************999.88***********65556799*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 katg dk++ + + vg+kk Lvfy g+apkgekt+W+mheyrl Cotton_A_33477_BGI-A2_v1.0 92 KATGADKPIGQ--PKPVGIKKALVFYAGKAPKGEKTNWIMHEYRL 134 *****98..789*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-61	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	59.009	10	160	IPR003441	NAC domain
Pfam	PF02365	1.1E-26	11	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MTATELQLHL PAGFRFYPTD EELVMHYLCR KCASQSIAVP FIAELDLYKY DPWDLPDLAL 60 YGEKEWYFFS PRDRKYPNGL RPNRAAGSGY WKATGADKPI GQPKPVGIKK ALVFYAGKAP 120 KGEKTNWIMH EYRLADVDRS VRKKNSLRLD DWVLCRIYNK KGCIEKQPTR GSVTKKASVT 180 EIEESKPDIG TLGVETCEFP PAATAIGNDY VYFDSSESVP RVHTDSSCSE HAVSREFMTE 240 VQSVPKWKEE LGMANNNALE FAYNYLDANM DIGFASQMQS SNQLSPYQDI FMYLQKPF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-78	4	166	9	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC110644	0.0	KC110644.1 Gossypium hirsutum NAC protein 9 (NAC9) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017609013.1	0.0	PREDICTED: NAC domain-containing protein 2-like isoform X1
Refseq	XP_017620855.1	0.0	PREDICTED: NAC domain-containing protein 2-like isoform X1
Swissprot	Q39013	1e-144	NAC2_ARATH; NAC domain-containing protein 2
TrEMBL	A0A0B0NZN4	0.0	A0A0B0NZN4_GOSAR; NAC domain-containing 2-like protein
STRING	Gorai.005G088800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM190	28	276

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	1e-146	NAC family protein

Publications ? help Back to Top
Florentin A,Damri M,Grafi G Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] Jensen MK, et al. ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] Wang YX Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] Yang X, et al. Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] Du Q,Wang H The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Liu Y,Sun J,Wu Y Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] Zhao J,Missihoun TD,Bartels D The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]