PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34065_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 198aa    MW: 22506.3 Da    PI: 6.3547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34065_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.21.4e-16550348
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +WT+eEd ll+++++++G g W++I+   g++R++k+c++rw++yl
  Cotton_A_34065_BGI-A2_v1.0  5 AWTEEEDYLLKKCIERYGEGKWHRIPVLAGLKRCRKSCRLRWLNYL 50
                                7*******************************************97 PP
2Myb_DNA-binding46.77.6e-1556101147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                 rg++ +eE  l+++++ +lG+++W++Ia +++ gRt++++k++w+ +
  Cotton_A_34065_BGI-A2_v1.0  56 RGSFAAEEVNLIINLHSLLGNRQWSLIAGRLP-GRTANDVKNYWNCH 101
                                 78999***************************.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.888150IPR017930Myb domain
SMARTSM007173.5E-13252IPR001005SANT/Myb domain
SuperFamilySSF466898.8E-26598IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-21557IPR009057Homeodomain-like
PfamPF002496.5E-15550IPR001005SANT/Myb domain
CDDcd001677.33E-11550No hitNo description
PROSITE profilePS5129423.38951106IPR017930Myb domain
SMARTSM007179.1E-1355104IPR001005SANT/Myb domain
PfamPF002494.9E-135699IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2258106IPR009057Homeodomain-like
CDDcd001672.50E-1061102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGGVAWTEEE DYLLKKCIER YGEGKWHRIP VLAGLKRCRK SCRLRWLNYL RPNIKRGSFA  60
AEEVNLIINL HSLLGNRQWS LIAGRLPGRT ANDVKNYWNC HLSKKLTYAP QSEDDQTAAA  120
TTTASMKPRS PAHVSPNTQQ ETSVWAPFHD VQVNQQGQEV AAEEPGTLLG DLEFDEGGSS  180
KWDWDDFIFD MDLWTASL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-20610610108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616806.11e-139PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV92e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A1U8IEZ41e-137A0A1U8IEZ4_GOSHI; transcription factor MYB114-like
STRINGGorai.013G118300.11e-131(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17352611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.15e-53myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]