PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34097_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 819aa    MW: 91334.6 Da    PI: 10.1366
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34097_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.2e-20101012100
                                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                 fkv +   +l+ g+l +p+kf++++g++   s  ++le +sg  W+v+l   k+++r+ l++GW+eF++   L+ g fvvF++
  Cotton_A_34097_BGI-A2_v1.0  10 FKVIL-QETLRDGILGIPRKFVRKYGNQ--LSSPVKLEVPSGAIWQVEL--AKTDERVRLQNGWREFAEHYSLELGSFVVFRY 87 
                                 55553.46778899***********988..5567***************..******************************** PP

                                 -SSSEE..EEEEE-SS CS
                          B3  85 dgrsefelvvkvfrks 100
                                 +g++ f  +v +f+ks
  Cotton_A_34097_BGI-A2_v1.0  88 EGNDHF--HVLIFDKS 101
                                 **9999..*****985 PP
2B3672.8e-21381475196
                                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                                 f  v+ ps+v  ++r+ +p +fa+++  ++++   ltl +++g++W  kl +  +kk+++++ + GW+eFv++n+L++gD++v
  Cotton_A_34097_BGI-A2_v1.0 381 FMIVMQPSYVRGTCRMFIPSDFARKFLTVHKS--NLTLCNSTGKTWHAKLYHpaNKKPNAHLCG-GWREFVEDNHLNVGDICV 460
                                 677999********************666444..6***************66989999999666.****************** PP

                                 EEE-SSSEE..EEEE CS
                          B3  82 Fkldgrsefelvvkv 96 
                                 F+l+++ e  ++v++
  Cotton_A_34097_BGI-A2_v1.0 461 FELIKHPEILMKVQI 475
                                 ***998665566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-282101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-272101IPR015300DNA-binding pseudobarrel domain
CDDcd100173.25E-22799No hitNo description
PROSITE profilePS5086314.8758101IPR003340B3 DNA binding domain
SMARTSM010198.9E-229101IPR003340B3 DNA binding domain
PfamPF023627.0E-1610100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-23375475IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-25376475IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-23379477No hitNo description
SMARTSM010192.9E-13381479IPR003340B3 DNA binding domain
PROSITE profilePS5086314.311381479IPR003340B3 DNA binding domain
PfamPF023625.9E-19381475IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-10626708IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-10628707IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-11631707No hitNo description
PROSITE profilePS508639.643633736IPR003340B3 DNA binding domain
SMARTSM010199.3E-7633728IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MFTSKTPHFF KVILQETLRD GILGIPRKFV RKYGNQLSSP VKLEVPSGAI WQVELAKTDE  60
RVRLQNGWRE FAEHYSLELG SFVVFRYEGN DHFHVLIFDK SASETEYPHT STEGNDGDDH  120
VSVEICDDVS ASRKNKEKPD LPCSLPQKKI STDSKLKNSS SHISLDEPCS IKNKLRNLKK  180
NENSSSSTGR VDAQRSIGNT DGTRSLVSDT NSSSQERCPS GSTELKDSKF QKRKKRVDSQ  240
YSKKDLRDEF ICSAKHDNGG VSGACGCLKP DLIGRTQPLA PTEKQRAADI VSWSSSRLVS  300
RKSKEKSHLP CPLPQKKMRI DSSNQHGQNS KLKVLSSGTS PDAQRTVKTK AFSCVQRLAA  360
IEKAHAVQIA SAFESTENPI FMIVMQPSYV RGTCRMFIPS DFARKFLTVH KSNLTLCNST  420
GKTWHAKLYH PANKKPNAHL CGGWREFVED NHLNVGDICV FELIKHPEIL MKVQIYPVVK  480
NASKASGQQA LGSIVSRVKT RSLVSDAEPN CQQSPSSSSE SKDLTDSHIK TLHDSPLDQK  540
TKKKLTRSSA QPCKMTRTSL SGSIQAKGIK HEKGKSLNFQ YSTEELGGGL KNSAKGDSGR  600
KSGARRCLKP DPVYQKQRAC TGGGAFRTSN PSFSVVIHPS HIGSCSTVHI PEEFGKRYLK  660
KNGEMMLRVA DGRSWNVEYE RIGTNKGRKA GFGGKSWGQF AMDNELELLE FAYNVLLVGY  720
ELQFGNGSEL GIFDKMERKL GGVWKLYRTA WANGIGVCQA MWDTWTSTRE SARPFGVTRA  780
NPLGRVKQYF ELVPRVTSFT RNERRLAVRS VRSELDYIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1635847827142B3 domain-containing transcription factor VRN1
4i1k_B3e-1635847827142B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637005.10.0PREDICTED: B3 domain-containing protein LOC_Os12g40080-like isoform X1
TrEMBLA0A0B0PB320.0A0A0B0PB32_GOSAR; B3 domain-containing transcription factor VRN1-like protein
STRINGGorai.013G245600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1837549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-24B3 family protein