PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34282_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GATA
Protein Properties Length: 147aa    MW: 15779.2 Da    PI: 10.4103
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34282_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.16.8e-201044135
                        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Cotton_A_34282_BGI-A2_v1.0 10 CTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRR 44
                                ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.5E-16357IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.585440IPR000679Zinc finger, GATA-type
SMARTSM004015.9E-16456IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14444No hitNo description
CDDcd002021.86E-13957No hitNo description
PfamPF003207.8E-181044IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401035IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MMSESSKKFC TDCKTTKTPL WRGGPAGPKS LCNACGIRYR KKRRAMLGLN KGIEKKKEIS  60
HSPSSDSNSS IAPTNDGGGE NLSANLNGLS ESVKMSLFAL GSEVLFQTSS SLSGVVKKQR  120
CQRRRKLGEE EQAAISLMAL SCGTVFA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6125251e-34JX612525.1 Gossypium hirsutum clone NBRI_GE55096 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618886.11e-103PREDICTED: GATA transcription factor 16-like
TrEMBLA0A2P5QYC94e-79A0A2P5QYC9_GOSBA; Uncharacterized protein
STRINGGorai.013G127900.13e-79(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16911712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-23GATA transcription factor 15