PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34432_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GeBP

Protein Properties

Length: 182aa MW: 20561.2 Da PI: 9.31

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34432_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	64.9	1.8e-20	60	143	2	85
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskeh 84 lfqrl+se+Dei+lL+ ++ + ak+ ++p +d+++fy+fvkk +++v+k q+++K++ + K + +k+ ++ ++s ++ Cotton_A_34432_BGI-A2_v1.0 60 LFQRLFSEDDEIALLKSMLAYSAKKVADPCADMNGFYDFVKKLFHIDVTKAQMMDKLKGISGKVESSTDKKIDELSKSSDSLL 142 69*************************************************************99999995555555555544 PP DUF573 85 d 85 d Cotton_A_34432_BGI-A2_v1.0 143 D 143 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.7E-15	61	139	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLSVLFSLFF LFLSFTLSSD RVKYGVLQKR PEKKVGKEGL AIAPVVEEVK KTGEDAKKLL 60 FQRLFSEDDE IALLKSMLAY SAKKVADPCA DMNGFYDFVK KLFHIDVTKA QMMDKLKGIS 120 GKVESSTDKK IDELSKSSDS LLDKKFGVFD MEVEVVEVGL DMVDGEKKTA LKVKWRKLQM 180 VQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ751265	6e-77	JQ751265.1 Gossypium hirsutum GL1-enhancer binding protein (GeBP) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012441856.1	9e-98	PREDICTED: mediator-associated protein 1
TrEMBL	A0A2P5S7A1	6e-84	A0A2P5S7A1_GOSBA; Uncharacterized protein
STRING	Gorai.009G233500.1	5e-83	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00390.1	4e-15	DNA-binding storekeeper protein-related transcriptional regulator