PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_34469_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 513aa    MW: 56006.8 Da    PI: 6.8641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_34469_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.38.5e-16302348455
                                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Cotton_A_34469_BGI-A2_v1.0 302 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 348
                                 6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20296364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-16301352No hitNo description
PfamPF000103.0E-13302348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-21302356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MNHCVPDFEM EDDDSIPSTL TRSKKPSMPE DEIMELLWQN GQVVMQSQNQ RSIKKSPPFK  60
FQGADPSATK EIRSSSSHHH HQQQQQQQQQ QQSLTDHHLF IQEDEMASWL HYPLSDASFD  120
HDFCADLLYP SSAAPCLTST TATTSAPPPL GKVTQVSALA VASASRPPIP PSRRNELEST  180
RIQNFVHFSR HKAAASGEND NINCANMSVA AGANTRSAGV SGSACKDNLA AYEVTVTSSP  240
GGSGASAEPT AQKAAAAEDR KRKGRELEDT EYHSEDVEFE SADTKKQTRG STSTKRSRAA  300
EVHNLSERRR RDRINEKMRA LQELIPRCNK SDKASMLDEA IEYLKSLQLQ VQMMSMGCGM  360
VPMMFPGVQQ YMPTMGMGIG MGMGMDIGRP TMPFTNVLAG SPLPTPAAAA HLGPRFPMPP  420
FHLPPPALAP APAPDPSRIQ PNNQSDTMLN RLGVQNPNQP CVPNFADPYQ QYNIGLHPMQ  480
LSPPQNQAMA QTSSSKPSTS KGADNLENHP SGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306311ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942602e-88GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017615087.10.0PREDICTED: transcription factor PIF1-like isoform X1
TrEMBLA0A1U8I9Z80.0A0A1U8I9Z8_GOSHI; transcription factor PIF1-like isoform X1
STRINGGorai.001G183400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.34e-64phytochrome interacting factor 3-like 5