PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_34527_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

WOX

Protein Properties

Length: 287aa MW: 32046 Da PI: 4.7251

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_34527_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.7	3e-21	131	191	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Cotton_A_34527_BGI-A2_v1.0 131 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKEITSELsqhgQISETNVYNWFQNRRARSKR 191 89***************99************************************97 PP
2	Wus_type_Homeobox	103.2	1.8e-33	130	193	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq Cotton_A_34527_BGI-A2_v1.0 130 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKEITSELSQHGQISETNVYNWFQNRRARSKRKQ 193 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-17	126	193	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.803	127	192	IPR001356	Homeobox domain
SMART	SM00389	7.1E-15	129	196	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-18	130	192	IPR009057	Homeodomain-like
Pfam	PF00046	4.7E-19	131	191	IPR001356	Homeobox domain
CDD	cd00086	9.36E-15	131	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEWEDQENQN QREILNVNVN NGGVMYVKVM TDEQLETLRE QIAVYAAICE QLVEMHKNLT 60 AQQDLAGLSL SFPLILLPMI DSYNTPPTDH MVVGSFFLCW LTIDGTIGSG RLGSLYCDPL 120 MTSAGHKITA RQRWTPTPVQ LQILERIFDQ GTGTPSKQKI KEITSELSQH GQISETNVYN 180 WFQNRRARSK RKQLGSSSNN AESELETEVE SPNEKKTKPE NLLSGQNPAP RAEDLCFQNP 240 EITSELHFLG VMSNPTTFNG GEHLSGKMGM PGSYNIFDQA GDYGMAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	192	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016746914.1	1e-176	PREDICTED: WUSCHEL-related homeobox 13-like
Refseq	XP_017613152.1	1e-176	PREDICTED: WUSCHEL-related homeobox 13-like
Swissprot	O81788	9e-99	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A1U8P9I7	1e-174	A0A1U8P9I7_GOSHI; WUSCHEL-related homeobox 13-like
STRING	Gorai.001G199200.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4620	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	2e-99	WUSCHEL related homeobox 13

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]